BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920201

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13280.1 | Symbols: AOC4 | allene oxide cyclase 4 | chr1:454...  69.4    1e-11


> AT1G13280.1 | Symbols: AOC4 | allene oxide cyclase 4 | chr1:4547454-4548875 
FORWARD LENGTH=1258
Length=1258

 Score = 69.4 bits (37),  Expect = 1e-11
 Identities = 109/140 (78%), Gaps = 19/140 (14%)
 Strand=Plus/Minus

Query  73    GGAAGGTGGAGTTCACGCGCTTAAATCCAGCTT-T-GT-A-GAGACATTAT-ACGCATTA  127
             ||||||||||||||||||||||||||||||||| | |  | | ||||  || |||| |||
Sbjct  1105  GGAAGGTGGAGTTCACGCGCTTAAATCCAGCTTATAGGGACGGGACAC-ATTACGC-TTA  1048

Query  128   CGAGT-CGGCTCTATAGTACACATTAAAAAGCCCAATACAAAGGCCCATTATTAAAATGT  186
             ||||  |||| | | | |||| |  |    || || ||   |||||||||||||||||||
Sbjct  1047  CGAGAACGGCCC-A-A-TACA-A--AG---GCTCATTATTTAGGCCCATTATTAAAATGT  997

Query  187   TAACACAATGAA-A-CAGCC  204
              ||||||||||| | |||||
Sbjct  996   AAACACAATGAACAACAGCC  977



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5