BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920209
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor fam... 1692 0.0
AT1G68670.1 | Symbols: | myb-like transcription factor family ... 161 1e-38
> AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor family
protein | chr1:4556892-4558708 FORWARD LENGTH=1237
Length=1237
Score = 1692 bits (916), Expect = 0.0
Identities = 1031/1085 (95%), Gaps = 13/1085 (1%)
Strand=Plus/Plus
Query 1 TAAGTCCCTAAAGCATCATCATGATTAAAAAGTTCAGCAATATGGATTACAACCAGAAAC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TAAGTCCCTAAAGTATCATCATGATTAAAAAGTTCAGCAATATGGATTACAACCAGAAAC 125
Query 61 GGGAGAGATGTGGGAAATACATCGAAGCCCTCGAAGAGGAACGTCGAAAGATTCATGTAT 120
| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 126 GAGAGAGATGTGGGCAATACATCGAAGCCCTCGAAGAGGAACGTCGCAAGATTCATGTAT 185
Query 121 TTCAACGTGAACTTCCTCTTTGCTTAGACCTTGTAACTCAAGCCATCGAGGCATGTAAAA 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 186 TTCAACGTGAACTTCCTCTTTGCTTAGACCTTGTAACTCAAGCGATCGAGGCATGTAAGA 245
Query 181 GGGAGATACCGGAGATGACGACGGATAATGTGTACGGACAACCAGAGTGCTCGGAGCAGA 240
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 246 GGGAGTTACCGGAGATGACGACGGAGAATATGTACGGACAACCAGAGTGCTCGGAGCAGA 305
Query 241 CGACCGGAGAATGTGGGCCGGTCTTGGAGCAGTTTCTAACAATTAAAGATTCATCGACCT 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 306 CGACCGGAGAATGTGGGCCGGTCTTGGAGCAGTTTCTAACTATTAAAGATTCATCGACAT 365
Query 301 CCAACGAAGAAGTAGATGAAGAGTTCGACGATGAGCACGGAAATCACGATCCGGACAATG 360
|||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 366 CCAACGAAGAAGAAGATGAAGAATTCGACGATGAGCATGGAAATCACGATCCAGACAATG 425
Query 361 GCTCCGAGGACAAGAACACGAAATCTGATTGGCTTAAGTCTGTTCAACTGTGGAACCAAC 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 426 ATTCCGAGGACAAGAACACGAAATCTGATTGGCTTAAGTCTGTTCAACTCTGGAATCAAC 485
Query 421 CCGACCA---TCTTCTTCCAAAAGAGGAACGGTTGCAGCAGGAGACGATGGAGACGGTGA 477
||||||| |||||||||||||||||| |||||||||||||||| || |||
Sbjct 486 CCGACCACCCACTTCTTCCAAAAGAGGAAAGGTTGCAGCAGGAGAC------GA---TGA 536
Query 478 CAAGAGACGAGAGTATGAGAAAGGATCCGATGGTGAACGGTTGCgaaggaaggaagagag 537
||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 537 CAAGAGATGAGAGTATGAGAAAAGATCCGATGGTGAACGGTGGCGAAGGGAGGAAGAGAG 596
Query 538 aggcggagaaagacggaggaggagggagaaagcaaagaaggTGTTGGTCATCGCAGTTGC 597
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 597 AGGCGGAGAAAGACGGAGGAGGAGGGAGAAAGCAAAGAAGGTGTTGGTCGTCGCAATTGC 656
Query 598 ATAGACGCTTCTTGAACGCTCTTCAACACTTAGGTGGACCTCATGTAGCTACGCCAAAGC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATAGACGCTTCTTGAACGCTCTTCAACACTTAGGTGGACCTCATGTAGCTACGCCAAAGC 716
Query 658 AAATCAGGGAGTTAATGAAAGTTGATGGATTAACCAATGATGAAGTTAAAAGCCATTTAC 717
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 717 AAATCAGGGAGTTTATGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTAC 776
Query 718 AGAAATATAGACTGCATACAAGAAGGCCACGCCAAACAGTCCCTAACAACGGAAACTCTC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGAAATATAGACTGCATACAAGAAGGCCACGCCAAACAGTCCCTAACAACGGAAACTCTC 836
Query 778 AAACGCAACATTTCGTAGTCGTCGGAGGTTTATGGGTCCCACAATCGGACTACTCTACGG 837
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 837 AAACGCAACATTTCGTAGTCGTCGGTGGTTTATGGGTACCACAATCGGACTACTCTACGG 896
Query 838 GCAAGaccaccggaggagccaccaccagcagtaccaccaccaccaccGGGATCTATGGAG 897
||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 897 GCAAGACTACCGGAGGAGCCACCACCAGCAGTACCACCACAACCACCGGCATCTATGGAA 956
Query 898 CCATGGCAGCACCGCCACCTCCACAATGGCCTAGCCATTCCAATTTTAGGCCGTCGATTA 957
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 957 CCATGGCCGCACCGCCACCTCCACAATGGCCTAGCCATTCCAATTATAGACCGTCGATTA 1016
Query 958 TTGTGGAAGAAGGATCGGGAAGTCATAGTGAAGGGGTTGTGGTCCGGTGTAGCTCGCCGG 1017
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1017 TTGTGGACGAAGGATCGGGAAGTCATAGTGAAGGGGTCGTGGTCCGGTGTAGCTCGCCGG 1076
Query 1018 CGATGTCTTCTTCTACCCGTAATCATTACGTCAAGAATAATTAATTTGTTTTTACTGT-C 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1077 CGATGTCTTCTTCTACCCGTAATCATTACGTCAAGAATAATTAATTTGTTTTTACTGTAC 1136
Query 1077 TCTAA 1081
|||||
Sbjct 1137 TCTAA 1141
> AT1G68670.1 | Symbols: | myb-like transcription factor family
protein | chr1:25782029-25784076 FORWARD LENGTH=1583
Length=1583
Score = 161 bits (87), Expect = 1e-38
Identities = 153/185 (83%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 564 agaaagcaaagaaggTGTTGGTCATCGCAGTTGCATAGACGCTTCTTGAACGCTCTTCAA 623
||||| ||||| |||| ||||| || | || || | || ||| | ||||| |||||
Sbjct 955 AGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAACGCGCTTCAG 1014
Query 624 CA-CTTAGGTGGACCTCATGTAGCTACGCCAAAGCAAATCAGGGAGTTA-ATGAAAGTTG 681
|| ||| || ||| ||||||| ||||| ||||||||||||||||| | | ||||| ||||
Sbjct 1015 CAGCTT-GGAGGATCTCATGTTGCTACACCAAAGCAAATCAGGGA-TCACATGAAGGTTG 1072
Query 682 ATGGATTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGAA 741
|||||||||| || || |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1073 ATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTTCACACAAGAA 1132
Query 742 GGCCA 746
|||||
Sbjct 1133 GGCCA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5