BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920215
Length=629
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 922 0.0
> AT1G13360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G25870.1);
Has 69 Blast hits to 69 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4576957-4577893
REVERSE LENGTH=937
Length=937
Score = 922 bits (499), Expect = 0.0
Identities = 591/634 (93%), Gaps = 12/634 (2%)
Strand=Plus/Plus
Query 1 AAACGTAATTGCTAAAAGCTATGGAGGAGGAGAAGAAGTTGTTGGCTTTAACTCGGACTG 60
|||||||||||| |||||||| ||||||||||||||||| | ||||||||||||
Sbjct 62 AAACGTAATTGC-CAAAGCTAT------GGAGAAGAAGTTGTTGGATATAACTCGGACTG 114
Query 61 ACTCAGCCGAGAAAAAGCGAGTTAGAGACGAGTTATCCGACGAAGCGGTTCTTGACTCGC 120
|||| || |||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 115 ACTCGGCTGAGAAAAAGCGAGTCAGAGACGAGTCATTCGACGAAGCGGTTCTTGACTCGC 174
Query 121 CGGAGGTGAAGAGGTTGAGAGATGATTTATTCGATGTTCTCGATGACTCGGATCCTGAAC 180
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 175 CGGAGGTGAAGAGGTTGAGAGATGATTTATTCGATGTCCTGGATGACTCGGATCCTGAAC 234
Query 181 CAGTTAGTCAAGATCTCGACTCCGTTATGAAAAGTTTCGAAGACGAGTTATCAACGGTCA 240
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 235 CAGTGAGTCAAGATCTCGACTCGGTTATGAAAAGTTTCGAAGACGAGTTATCAACGGTCA 294
Query 241 CCACCACGACGGGGCAAGGCTC-T-T-CCGCCGCCGAAACTCAGCCTGATCTCGGTTATC 297
|||||||||||| |||||| || | | |||||| ||||||||||||||||||||| ||||
Sbjct 295 CCACCACGACGGCGCAAGGTTCCTCTACCGCCGGCGAAACTCAGCCTGATCTCGGATATC 354
Query 298 TTCTCGAAGCTTCCGATGACGAGCTTGGTTTACCTCCGCCTCCATCAATTTCTCCGGTTC 357
|||| |||||||||||||| |||||||||||||| || |||||||| |||||||||||||
Sbjct 355 TTCTTGAAGCTTCCGATGATGAGCTTGGTTTACCACCACCTCCATCGATTTCTCCGGTTC 414
Query 358 CCGTCGCGAAGGAGGAGGAAACGACGGAGACGTTAACGGATTTGGTACGAGCGTCGTCTG 417
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||
Sbjct 415 CCGTCGCGAAGGAGGAGGTAACGACGGAGACGGTAACGGATTTGGTACGAGCGTCTTCTG 474
Query 418 ATTCGTCAGGAATCGACGAGATTTGGGGATTTGAAGATCACGTAACGAATTTCGGTGATT 477
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 475 ATTCGTCAGGAATCGACGAGATTTGGGGATTTGAAGATCACGTGTCGAATTACGGTGGTT 534
Query 478 TAGATTTTGGTTCCGGCGTCGGTGACGGTGGAGATTACGTGGCTGTTGAGGGGTTGTTTG 537
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 535 TAGATTTTGGTTCCGGCGTCGGAGATGGTGGAGATTACGTGGCTGTTGAGGGGTTGTTTG 594
Query 538 AATTTTCCGACGATTGTTTTGATTCCGGCGATCTGTTTTCGTGGCGGTCGGAGTCGTTAC 597
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 595 AATTTTCCGACGATTGTTTTGACTCCGGCGATCTGTTTTCGTGGCGGTCGGAGTCGTTAC 654
Query 598 CGGCGGAATAAA-AA-TAACAAACtttttttttA 629
|||||||||||| || ||||||||||||||||||
Sbjct 655 CGGCGGAATAAATAAATAACAAACTTTTTTTTTA 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30341424788
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5