BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920218

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08868.1 | Symbols:  | unknown protein; Has 35333 Blast hits...  73.1    2e-12


> AT4G08868.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:5668607-5669047 
FORWARD LENGTH=441
Length=441

 Score = 73.1 bits (39),  Expect = 2e-12
 Identities = 93/117 (79%), Gaps = 12/117 (10%)
 Strand=Plus/Plus

Query  14   GGTCGACATGGTCGCCGGTGAGATCTAT-TTCCAAAA-CGTGGAAGCTCGGATTT-CCGT  70
            |||||||||||||||||||||||||||| ||| | || | |||  ||||| |||| ||| 
Sbjct  89   GGTCGACATGGTCGCCGGTGAGATCTATCTTC-AGAATC-TGGTTGCTCG-ATTTTCCGG  145

Query  71   TAAAGATGGCTACAACTCGAACCTCTCCAGT-T-TCTCACCTTCCGG-TGATGACAT  124
            ||| | ||||| |||||| ||  | ||  || | |||||||| |||| ||| |||||
Sbjct  146  TAACGGTGGCTCCAACTCTAATATATC--GTCTCTCTCACCT-CCGGGTGAAGACAT  199



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5