BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920224
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13450.1 | Symbols: GT-1 | Homeodomain-like superfamily prot... 1857 0.0
AT3G25990.1 | Symbols: | Homeodomain-like superfamily protein ... 680 0.0
> AT1G13450.1 | Symbols: GT-1 | Homeodomain-like superfamily protein
| chr1:4612731-4615205 REVERSE LENGTH=1579
Length=1579
Score = 1857 bits (1005), Expect = 0.0
Identities = 1197/1282 (93%), Gaps = 44/1282 (3%)
Strand=Plus/Plus
Query 15 ACACTGCAATGTTCATTTCCGACAAATCTCGTCCTAGTACTGATTTCTACAAAGACGATA 74
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 83 ACACAGCAATGTTCATTTCCGACAAATCTCGTCC---TACTGATTTCTACAAAGACGATC 139
Query 75 ATCCCAATTCCTCCACCACCA-CA--ACACGCGATATGATGATCGATG---TCACCACTA 128
||| ||||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct 140 ATCACAATTCCTCCACCACCAGCACCACACGCGATATGATGATCGATGTACTCACCACTA 199
Query 129 CCAACGAATCAGTAGATCTacaatctcaccaccaccacaatcacaatcaccacaatcgtc 188
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 200 CCAACGAATCAGTAGATCTACAATCT---CACCACCAC---CACAATCACCACAATCATC 253
Query 189 atctccaccaacctcagccacaacaacaGATTCTCCTCGGAGAAAGCAGTGGTGAGGATC 248
||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 254 ATCTCCACCAATCTCAGCCACAACAACAGATTCTCCTCGGAGAAAGCAGTGGAGAAGATC 313
Query 249 ACGAAGTTAAAGCACCAAAGAAACGAGCAGAGACATGGGTTCAAGACGAAACTCGTAGCT 308
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 314 ACGAAGTTAAAGCACCAAAGAAACGAGCGGAGACATGGGTTCAAGACGAAACTCGTAGCT 373
Query 309 TAATCATGTTCCGTAGAGGTATGGATGGTTTATTCAACACATCCAAATCTAATAAGCATC 368
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 374 TAATCATGTTCCGTAGAGGTATGGATGGTTTATTCAATACATCCAAATCTAATAAACATC 433
Query 369 TCTGGGAACAGATTTCTG-CTAAGATGAGAGAAAAAGGGTTTGATCGATCTCCGACTATG 427
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TCTGGGAACAGATTTC-GTCTAAGATGAGAGAAAAAGGGTTTGATCGATCTCCGACTATG 492
Query 428 TGTACTGATAAGTGGAGGAATCTATTGAAAGAGTTTAAGAAAGCAAAGCATCATGATAGA 487
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 493 TGTACTGATAAATGGAGGAATCTGTTGAAAGAGTTTAAGAAAGCTAAGCATCATGATAGA 552
Query 488 GGGAATGGATCAGCGAAGATGTCGTATTACAAGGAGATTGAAGATATTCTTAGAGAGAGG 547
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 553 GGAAATGGATCGGCGAAGATGTCGTATTACAAAGAGATTGAAGATATTCTTAGAGAGAGG 612
Query 548 AACAAGAAAGTG--A-CACCACAGTATAATAAGAGCCCTAATACACCACCTACATCAGCC 604
| ||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AGCAAAAAAGTGACACCACCACAGTATAATAAGAGCCCTAATACACCACCTACATCAGCC 672
Query 605 AAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGATGATACAAGCATTTCTTTT 664
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 673 AAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGATGATACGAGCATTTCTTTT 732
Query 665 GGATCCGTTGAAGCTAATGGCAGGCCAGCCTTAAACCTTGAAAGGCGTCTTGATCATGAT 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GGATCCGTTGAAGCTAATGGCAGGCCAGCCTTAAACCTTGAAAGGCGTCTTGATCATGAT 792
Query 725 GGTCATCCTCTTGCAATCACTACAG---TTGATGCTGTTGCAGCAAATGGAGTTACCCCT 781
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 793 GGTCATCCTCTTGCAATCACTACAGCAGTTGATGCTGTTGCAGCAAATGGAGTTACTCCT 852
Query 782 TGGAATTGGAGAGAGACTCCTGGAAACGGTGGTGATAGTCATGGTCAGGCTTTTGGTGGG 841
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 853 TGGAATTGGAGAGAGACTCCTGGAAACGGTGATGATAGTCATGGTCAGCCTTTTGGTGGT 912
Query 842 AGGGTCATAACTGTGAAATTTGGTGACTATACAAGAAGAATCGGCGTTGATGGTAGTGCA 901
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 913 AGGGTCATAACAGTGAAATTTGGTGACTATACAAGAAGAATCGGTGTTGATGGTAGTGCA 972
Query 902 GAAGCAATCAAAGAGGCAATCAGATCTGCTTTTGGGTTAAGAACTCGACGAGCTTTTTGG 961
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 973 GAAGCAATCAAAGAGGTAATCAGATCTGCTTTTGGGTTAAGAACTCGAAGGGCTTTTTGG 1032
Query 962 TTAGAAGATGAAGATCAGATTATTCGCTGTCTTGACCGAGACATGCCCTTAGGGAACTAT 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TTAGAAGATGAAGATCAGATTATTCGCTGTCTTGACCGAGACATGCCCTTAGGGAACTAT 1092
Query 1022 CTACTCCATCTCGATAATGTATGCAAAACCCATCTTGCAGGACTGGCCATTAGGGTTTGC 1081
||||||| ||| | | ||| | | | | |||||||||||||||||||
Sbjct 1093 CTACTCCGTCT-G-----G-ATG-A-------T---G--G-ACTGGCCATTAGGGTTTGC 1131
Query 1082 CATTATGATGAATCCAACCAATTACCAGTCCATTCAGAAGAGAAGATCTTCTACACGGAA 1141
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1132 CATTATGATGAATCCAACCAATTACCAGTCCATTCAGAAGAGAAAATCTTCTACACTGAA 1191
Query 1142 GAAGATTACCGCGATTTTCTGGCTCGACGGGGATGGACATGCTTGCAAGTTGATGGTTTT 1201
||||| |||||||| ||||||||||||| ||||||| || || |||||||||||||||||
Sbjct 1192 GAAGACTACCGCGAGTTTCTGGCTCGACAGGGATGGTCAAGCCTGCAAGTTGATGGTTTT 1251
Query 1202 AGGAACATAGAAAACATGGATGATCTTCAACCTGGTGCCGTGTACCGAGGTGTGAGATGA 1261
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1252 AGGAACATAGAAAACATGGATGATCTTCAACCTGGTGCTGTGTATCGAGGTGTGAGATGA 1311
Query 1262 GAAAATAAGATCACAAAACTTC 1283
| |||| |||||||||||||||
Sbjct 1312 GGAAATGAGATCACAAAACTTC 1333
> AT3G25990.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:9504677-9506787 REVERSE LENGTH=1372
Length=1372
Score = 680 bits (368), Expect = 0.0
Identities = 875/1104 (79%), Gaps = 98/1104 (9%)
Strand=Plus/Plus
Query 203 cagccacaacaacaGATTC-TCCTCGGAGAAAGCAGT---GGTGAGGATCACGAAG-T-- 255
||||||| || |||| || ||||||||||||||||| || |||||||| | || |
Sbjct 163 CAGCCAC-AC--CAGA-TCATCCTCGGAGAAAGCAGTGGAGGAGAGGATCATG-AGATCA 217
Query 256 T-AAAGCACCAAAGAAACGAGCAGAGACATGGGTTCAAGACGAAACTCGTAGCTTAATCA 314
| ||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||
Sbjct 218 TCAAAGCACCAAAGAAACGAGCAGAGACATGGGCACAAGACGAGACTCGAACCTTAATC- 276
Query 315 TG-TTCCGTAGAGGTATGGATGGT-TTATTCAACACATCCAAATCTAATAAGCATCTCTG 372
| || || |||| ||||| | || |||||||| ||||||||||| || ||||||||
Sbjct 277 TCATTACGGAGAGAAATGGACAATCTT-TTCAACACTTCCAAATCTAACAAACATCTCTG 335
Query 373 GGAACAGATTTCTGCTAAGATGAGAGAAAAAGGGTTTGATCGATCTCCGA-CTATGTGTA 431
||||||||||||| || |||||||| ||||||||||||||||| || | |||||||||
Sbjct 336 GGAACAGATTTCTAAGAAAATGAGAGAGAAAGGGTTTGATCGATCACC-ATCTATGTGTA 394
Query 432 CTGATAAGTGGAGGAATC-TATTGAAAGAGTTTAAGAAAGCAAAGCATCATGA---TAGA 487
| || ||||||||||| | |||||||||||||||||||||| ||||| ||||| || |
Sbjct 395 CGGACAAGTGGAGGAA-CATATTGAAAGAGTTTAAGAAAGCTAAGCAACATGAAGATAAA 453
Query 488 GGGA-A--TGGA---TCAGCGAAGATGTCGTATTACAAGGAGATTGAAGATATTCTT-AG 540
| | | |||| ||| |||||||||| |||||||| ||||||||||||||| || ||
Sbjct 454 GCAACAAGTGGAGGATCAACGAAGATGTCTTATTACAATGAGATTGAAGATATT-TTCAG 512
Query 541 AGAGAGGAACAAGAAAGTGACACCACAGTATAATAAGAGCC--CTAATAC-ACCACC-TA 596
||| || || ||||||||| || | ||||| | | || ||| ||| || ||| |
Sbjct 513 AGAAAGAAAGAAGAAAGTGGCATT-C--TATAAGA-GT-CCTGCTACTACTAC-ACCAT- 565
Query 597 CATCAGCCAAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGATGATACAAGCA 656
| || || |||||||||||||||||||||||||| |||||||||||||| ||||| | |
Sbjct 566 CTTCTGCTAAAGTTGATTCCTTTATGCAATTTACAGATAAAGGTTTTGAAGATACTGGTA 625
Query 657 TTTCTTTTGGATCCGTTGAAGCTAATGGCAGGCCAGC-CTTAAACCTTGAAA-GGCGTCT 714
|||| ||| ||| ||||||||||||||||||||| | || ||| ||||||| || | ||
Sbjct 626 TTTCATTTACATCTGTTGAAGCTAATGGCAGGCCAACGCT-AAATCTTGAAACGGAG-CT 683
Query 715 TGATCATGATGGTCATCCTCTTGCAATCACTACAGTTGATGCTGTTGCAGCAAATGGAGT 774
|||||||||||||| |||||| | || || | | ||| | | |||||||||||||
Sbjct 684 TGATCATGATGGTCTTCCTCTCCCCATTGCTGC--T-GATCCCATCACAGCAAATGGAGT 740
Query 775 TACC-CCTTGGAATTGGAGAGAGACTCCTGGAAACGGTGGTGATAGTCATGGTCAGGCTT 833
| || ||||||||||||||||| || |||||||| || | | | | |||||||| | |
Sbjct 741 T-CCTCCTTGGAATTGGAGAGACACCCCTGGAAATGGCG-T--T-G--ATGGTCAGCCAT 793
Query 834 TTGGTGGGAGGGTCATAACTGTGAAATTTGGTGACTATACAAGAAGAATCGGCG-TTGAT 892
||| ||||||| ||||||| ||||||||||| || || |||||| || | || | |||||
Sbjct 794 TTGCTGGGAGGATCATAACGGTGAAATTTGGAGATTACACAAGACGAGTTGG-GATTGAT 852
Query 893 GGTAGTGCAGAAGCAATCAAAGAGGCAATCAGATCTGCTTTTGGGTTAAGAACTCGACGA 952
|||| ||| |||||||| || || || |||||||| || ||| | || ||||| |||||
Sbjct 853 GGTACTGCTGAAGCAATTAAGGAAGCTATCAGATCCGCGTTTAGATTGAGAACAAGACGA 912
Query 953 GCTTTTTGGTTAGAAGATGAAGATCAGATTATTCGCTGTCTTGACCGAGACATGCCCTTA 1012
||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||| |||
Sbjct 913 GCTTTTTGGCTAGAAGATGAAGAACAGGTTATTCGCTCTCTTGACCGAGACATGCCTTTA 972
Query 1013 GGGAACTATCTACTCCATCTCGATAATGTATGCAAAACCCATCTTGCAGGACTGGCCATT 1072
||||||||| |||||| | || || ||| || | ||| | ||| ||
Sbjct 973 GGGAACTATATACTCCG-C---AT--TG-ATG-AA----------G--GGA-TAGCCGTT 1011
Query 1073 AGGGTTTGCCATTATGATGAATCCAA-CCAATTACCAGTCCATTCA-GAAGAGAAGATCT 1130
|| || ||||| ||||||||||| | || |||||||||||| || || |||||||| |
Sbjct 1012 AGAGTGTGCCACTATGATGAATCTGATCCG-TTACCAGTCCAT-CAAGAGGAGAAGATAT 1069
Query 1131 TCTACACGGAAGAAGATTACCGCGATTTTCT-GGCTCGACGGGGATGGACATG-CTT-GC 1187
||||||| |||||||||||||| ||||| || ||||||||| ||||||||||| || |
Sbjct 1070 TCTACACCGAAGAAGATTACCGAGATTT-CTTGGCTCGACGAGGATGGACATGTCTGAG- 1127
Query 1188 A-AGTT-GATG-GTTTTAGGAACATAGAAAACATGGATGATCTTCAA-CCTGGT-GCCGT 1242
| |||| || | |||| | |||||||| || ||||| || |||||| || ||| || |
Sbjct 1128 AGAGTTTGACGCGTTTCAA-AACATAGACAATATGGACGAGCTTCAATCC-GGTCGCT-T 1184
Query 1243 GTACCGAGGTGTGAGATGAGAAAA 1266
||| |||| |||||||||||||
Sbjct 1185 ATACAGAGGAATGAGATGAGAAAA 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63102085065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5