BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920228
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13470.1 | Symbols: | Protein of unknown function (DUF1262)... 643 0.0
> AT1G13470.1 | Symbols: | Protein of unknown function (DUF1262)
| chr1:4620228-4621580 REVERSE LENGTH=1272
Length=1272
Score = 643 bits (348), Expect = 0.0
Identities = 454/505 (90%), Gaps = 8/505 (2%)
Strand=Plus/Plus
Query 166 AAGCTTCGGCTAATGCAAAAGAGGAAGACAGAGTCCCCTGCTGTTTTTGTTTCAGCTATG 225
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AAGCTTCGGCTAATGCGAAAGAGGAAGACAGAGTCCCCTGCTGTTTTTGTTTCAGCTATG 408
Query 226 TTCCTGAAGCTAAGCCACAACAACCAGATCCTTATGATATATACCAACAATTTGAGATCC 285
|||||||||||||||||||| || |||||||| |||| ||||| || ||||| ||||||
Sbjct 409 TTCCTGAAGCTAAGCCACAAGAAGCAGATCCTAATGACATATATCAGCAATTCCAGATCC 468
Query 286 ATCAAC--CGAA-ATCACTGTCGAGAAATTACTTTGCAACATCCGTTGCTCCTGATGGGG 342
||||| ||| |||| | ||| | |||| ||| || || ||||||||| | |||
Sbjct 469 ATCAAAAACGATCATCA-TCTCGCTA--TTACACTGCCACTTCTGTTGCTCCTAACGGGA 525
Query 343 TACCACCAGAGTTTCTTAAGAGAAAGTATTGGA-CTGTTGAGTACTCGACATCAGAAGAC 401
|||||||||||||||||||||||||||||||| | | ||||||||||||||| || |||
Sbjct 526 AACCACCAGAGTTTCTTAAGAGAAAGTATTGGAAC-GCTGAGTACTCGACATCTGAGGAC 584
Query 402 TTTGGTTTAAGAGATGATGCAAAAGGTATTTACAATGAGATTCGTTCTGAGCTTCCTAAT 461
|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 585 TTTGGTCTAAAAGATGATGCAAAAGGTATTTACACTGAGATTCGTTCTGAGCTTCCTAGT 644
Query 462 GATGTGAATGCAAGTGTTGTGGTAGGAAAATGGTATGTCCCTTTCATATCTGTGAAGGAA 521
||| | ||| |||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 645 GATTTTAATACAAGCGTTGTGGTAGGAAAATGGTATGTCCCTTTCATATTTGTGAAGGAA 704
Query 522 GGAAATGCAAAGGATCAGCTTAAGAGCTCAACTTATTATAGCATGATTCTTATCCAAAGA 581
|||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||
Sbjct 705 GGAAATGCAAAGGATCAGCTTAAGAGCTCAGCTTATTACAGCATGATTCTTCTACAAAGA 764
Query 582 TGGGAAGAGGTTTACTCTTGTGAAAACGCTTACAACGAGAACCGCGAGGTTGTAGTTAAT 641
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 765 TGGGAGGAGGTTTACTCTTGTGAAAACGCTTACAACGAAAACCGCGAGGTTGTAGTTGAT 824
Query 642 GTTGAAGTGGAAACAGAAGTTGTGA 666
|||||||||||| ||||||||||||
Sbjct 825 GTTGAAGTGGAACCAGAAGTTGTGA 849
Score = 346 bits (187), Expect = 2e-94
Identities = 235/258 (91%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 682 GAAGAAGGATGGGTTTGAGAACTGTGGTGACT-GAGAGGATGAAATGGGAAGAGGAGAGA 740
|||| ||||| ||||||||| ||||||| | | |||||||||||||||||||||||||||
Sbjct 926 GAAG-AGGATAGGTTTGAGATCTGTGGTCA-TGGAGAGGATGAAATGGGAAGAGGAGAGA 983
Query 741 TTTGGGTGGAAAAGCGAACCGCGAAGAGCAGTGGTTAAGAGATCTGAGAGATTTGATGGA 800
|| |||||||| | ||||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 984 TTCGGGTGGAAGATTGAACCGCAAAGAGCAGTGGTTAAGAAATCTGAGAGATTTAATGGA 1043
Query 801 GGTGGTTCGAATTGGAAGAATTATAGATGTTATGTGTTTGTGGAGAGCTTTGAGTTGAGG 860
|| |||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct 1044 GGCGGTTCGAATTGGAAGAGTTATAGATGTTATGTGTTGGTGGAGAGCTTTGAATTGAGG 1103
Query 861 AGAATGGATGAGAGTTTAGTGTTGGCATTTGAGTTTAAACATGTTGATAAGTTGAGGACC 920
|||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 1104 AGAAAGGATAAGAGTTTAGTGTTGACATTTGAGTTTAAGCATGTTGATAAGTTGAGAACC 1163
Query 921 AAGTGGGATTCATGAGAG 938
|||||||| |||||||||
Sbjct 1164 AAGTGGGAATCATGAGAG 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5