BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920239
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13600.1 | Symbols: AtbZIP58, bZIP58 | basic leucine-zipper ... 953 0.0
AT2G04038.1 | Symbols: AtbZIP48, bZIP48 | basic leucine-zipper ... 294 6e-79
> AT1G13600.1 | Symbols: AtbZIP58, bZIP58 | basic leucine-zipper
58 | chr1:4650787-4651469 REVERSE LENGTH=683
Length=683
Score = 953 bits (516), Expect = 0.0
Identities = 580/611 (95%), Gaps = 4/611 (1%)
Strand=Plus/Plus
Query 1 AACAAATCATATCAAAGATCATGAACACGATTCCGGCAGAACTCACCGGATACTTCCATT 60
||||||||| | |||||||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 73 AACAAATCAAAGCAAAGATCATGAACACGATTCCAGCCGAACTCACTGGATACTTCCACT 132
Query 61 ATCTATCACCGGATAAGTATAATAACCAAAAC-CCAATCATGGAGTCTGAGTACTTCAAC 119
||||| |||| ||||| |||||||||| |||| |||||||||||||||||||||||||||
Sbjct 133 ATCTACCACCAGATAAATATAATAACC-AAACACCAATCATGGAGTCTGAGTACTTCAAC 191
Query 120 ATGCCTTCTTCTCCTACTTCTTCTT-CTACATTCTACCACCTCAACGGTTTGATCAACAA 178
||||| |||||||||||||||| || || | |||||||||||||| ||| ||||||||||
Sbjct 192 ATGCCCTCTTCTCCTACTTCTTGTTCCT-CCTTCTACCACCTCAATGGTCTGATCAACAA 250
Query 179 CAACAAGTACTCTTCATCATTCAATGGTCAGGATCTAATGACGAGCAACAACTCAACTTC 238
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 251 CAACAACTACTCTTCATCATCCAATGGTCAGGATCTAATGACGAGCAACAACTCAACTTC 310
Query 239 AGACGACGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGAAGAATGATCTC 298
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 311 AGACGAAGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGGAGAATGATCTC 370
Query 299 TAACAGGGAATCTGCTCGTAGGTCAAGGATGAGAAAGCAGAGACATCTCGATGAGCTTTG 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 371 TAACAGGGAATCTGCTCGTAGGTCAAGAATGAGAAAGCAGAGACATCTCGATGAGCTTTG 430
Query 359 GTCTCAAGTGAAAAGACTTCGCACTGATAACTACTGTCTTATCGATAAGCTGAACCGCGT 418
||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 431 GTCTCAAGTGATAAGACTTCGCACTGATAACCACTGTCTTATGGATAAGCTGAACCGCGT 490
Query 419 ATCTGAAAGCCATGAGCTTGCCTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGA 478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 491 ATCTGAAAGCCATGAGCTTGCTTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGA 550
Query 479 TCTCAGACAGCTTATCTCTGAGATTAAGTCAAACAACGAAGACGACAACAGTTTTCTAAG 538
|||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 551 TCTCAGACAGCTGATCTCTGAGATAAAGTCACACAACGAAGACGACAACAGTTTTTTAAG 610
Query 539 AGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTT 670
Query 599 TGAGTTGTGTT 609
|||||||||||
Sbjct 671 TGAGTTGTGTT 681
> AT2G04038.1 | Symbols: AtbZIP48, bZIP48 | basic leucine-zipper
48 | chr2:1331919-1332419 FORWARD LENGTH=501
Length=501
Score = 294 bits (159), Expect = 6e-79
Identities = 357/449 (80%), Gaps = 28/449 (6%)
Strand=Plus/Plus
Query 117 AACATGCCTTCTTCTCCTACTTCTTCTTCTACATTCTACCACCTCAACGGTTTG---ATC 173
||||||||||| ||||| || | ||||| | || || |||| |||| |||| |||
Sbjct 61 AACATGCCTTCATCTCCAAC--C-TCTTC--C-TTAAACTACCTAAACGATTTGATCATC 114
Query 174 AACAACAACAAGTACTCTTCATCATTCAATGGTCAGGATCTAATGACGAGCAACAACTCA 233
||||||||||| || || ||||||| ||| |||| ||||| |||| ||||||||||||
Sbjct 115 AACAACAACAACTATTCCTCATCATCCAACAGTCAAGATCTCATGATAAGCAACAACTCA 174
Query 234 ACTTCAGACGACGATCACCAACAAAG--T-ATGGT-CATCGATGAGAGGAAACAAAGAAG 289
||||| ||||| ||||| || ||||| | ||||| | |||| ||||||||||| |||||
Sbjct 175 ACTTCCGACGAAGATCATCATCAAAGCATCATGGTAC-TCGACGAGAGGAAACAGAGAAG 233
Query 290 AATGATCTCTAACAGGGAATCTGCTCGTAGGTCAAGGATGAG-AAAGCAGAGACATCTCG 348
||| | || ||||| |||||||| | |||||||||||||| ||| ||||||||||| |
Sbjct 234 GATGCTTTCGAACAGAGAATCTGCAAGGAGGTCAAGGATGAGGAAA-CAGAGACATCTTG 292
Query 349 ATGAGCTTTGGTCTCAAGTGAA-AAGACTTCGCA-CTGATAACTACTGTCTTATCGATAA 406
|||| || |||||||| || || ||| ||||||| | || ||| ||||||||||||||||
Sbjct 293 ATGAACTCTGGTCTCAGGT-AATAAGGCTTCGCAAC-GAGAACAACTGTCTTATCGATAA 350
Query 407 GCTGAACCGCGTATCTGAAAGC-CATGAGCT-TGCCTTAAAGGAGAACGCTAAGCTTAAA 464
||||||||||||||| || | | || | | || || ||||||||| |||| || |||
Sbjct 351 GCTGAACCGCGTATCGGAGA-CTCAAAAT-TGTGTATTGAAGGAGAACTCTAAACTCAAA 408
Query 465 GAGGAAACTTCTGATCTCAGACAGCTTATCTCTGAGATT-AAGTCAAACAACGAAGA-CG 522
|| ||| ||||||||||| |||||||| | | ||| | | || || ||||| ||| | |
Sbjct 409 GAAGAAGCTTCTGATCTCCGACAGCTTGTTTGTGA-ACTGAAATCTAACAA-GAACAACA 466
Query 523 ACAACAGTTTTCTAAGAGAGCTCGAAGAT 551
|||| ||||||| ||||||| | ||||||
Sbjct 467 ACAATAGTTTTCCAAGAGAGTTTGAAGAT 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30492127229
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5