BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920240

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...  95.3    3e-19


> AT1G27150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr1:9429047-9432274 FORWARD LENGTH=1743
Length=1743

 Score = 95.3 bits (51),  Expect = 3e-19
 Identities = 55/57 (96%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  212  TCAGGTTCTTCAACATGAATGTCAGTTTAAAGAAGCAGTGGAGTTCATGGAAGCACT  268
            ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  727  TCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCACT  783


 Score = 52.8 bits (28),  Expect = 2e-06
 Identities = 31/32 (97%), Gaps = 1/32 (3%)
 Strand=Plus/Plus

Query  290  TTGTGTCATGTTCTTCAACATGAATGTCAGGT  321
            |||||||||||||||||||||||||||| |||
Sbjct  722  TTGTGTCATGTTCTTCAACATGAATGTC-GGT  752



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16085679680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5