BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920243

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13608.1 | Symbols:  | Defensin-like (DEFL) family protein |...   243    9e-64


> AT1G13608.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:4661682-4662029 FORWARD LENGTH=237
Length=237

 Score =  243 bits (131),  Expect = 9e-64
 Identities = 174/195 (89%), Gaps = 1/195 (1%)
 Strand=Plus/Plus

Query  80   CTTTTTCAAACTCTGTGGTGGAAGCCAATAAGAAAGAGATCATAATCACATTCACATGCA  139
            ||||||||||||||||||||||||||||   |||||||  || ||||| |||  ||||||
Sbjct  43   CTTTTTCAAACTCTGTGGTGGAAGCCAAGGGGAAAGAGGCCACAATCAAATTTTCATGCA  102

Query  140  AAAAGAAATCGGACTGTTTCACAAACATTGCTTGTGAAGC-TTGTGTTGATTGCCGATGT  198
            ||||||| ||||||||||| ||||||||||||||| | || ||||  ||||| |||||||
Sbjct  103  AAAAGAATTCGGACTGTTTTACAAACATTGCTTGTTATGCTTTGTACTGATTACCGATGT  162

Query  199  GATAAAGGATTATGTAAATGCCATGGTTTTGGTGGAGACAAGGGAAATCCAACAGCTGCG  258
            |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct  163  GATAAAGGATTATGTAAATGCCATGGTTTTGGTGGAGAAAAGGAAAATCCCACAGCTGCG  222

Query  259  CCATTAACTCCTTAA  273
            ||||||||| |||||
Sbjct  223  CCATTAACTGCTTAA  237


 Score = 67.6 bits (36),  Expect = 6e-11
 Identities = 42/45 (93%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  22  ATGACCAACCTTCGCGTAACCATTGCAGTGTTTTTGGCCGCTCTT  66
           |||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct  1   ATGAGCAATCTTCGCCTAACCATTGCAGTGTTTTTGGCCGCTCTT  45



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13522024481


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5