BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920251
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13670.1 | Symbols: | unknown protein; Has 22 Blast hits to... 865 0.0
> AT1G13670.1 | Symbols: | unknown protein; Has 22 Blast hits
to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:4688156-4688966 FORWARD LENGTH=811
Length=811
Score = 865 bits (468), Expect = 0.0
Identities = 646/727 (89%), Gaps = 32/727 (4%)
Strand=Plus/Plus
Query 3 GAACCTCAAGAAACAACAATGTCGGAGATGGCTAGAGATTCTTCAACATCAGAAGAGAAA 62
||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 29 GAA-CTCAAGAAACAACAATGTCGGAGATGGCCGGAGATTCTTCAACATCAGAAGATAAA 87
Query 63 ATCCATAGACCAAACCGCGAGAGGAATGTCTCCGGCGAACTTGACGTCTTCGAAGCCACT 122
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 ATCCATAAACCAAACCGCGAGAGGAATGTCTCCGGCGAACTTGACGTCTTCGAAGCCACT 147
Query 123 CGATATTTCTCCGACTTCAACGAACC-A--ACGAT-GA-T-C-C-A-AAT-----T-CAT 167
|||||||| ||||||||||||||||| | ||||| || | | | | ||| | ||
Sbjct 148 CGATATTTTTCCGACTTCAACGAACCAACGACGATCGAGTACTCAAGAATCCAAATACAG 207
Query 168 AAACAAAGCATCGTTACAGAAAATCGACAGAAGAGAGTACACCCTGAGACAGAGGAACAA 227
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 208 AAACAAAGCATTGTTACAGAAAATCGACAGAAGAGAGTACACCCTGAGACAGAAGAACAC 267
Query 228 CTCCCGAAACCTAGAGTCGTCGTCATAAAGCCGCAGAAGAAGGAGATGACACGTGGCGGT 287
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 268 CTCCCTAAACCTAGAGTCGTCGTCATAAAGCCGCAGAAGAAAGAGATGACACGTGGCGGC 327
Query 288 GGTAAGAAGCTGACAAGTTTCTTGAACTCTCTTCTTCGCTCAGCTGGTCTAAAGAAG--- 344
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 GGTAAGAAGCTAACCAGTTTCTTGAACTCTCTTCTTCGCTCAGCTGGTCTAAAGAAGAAG 387
Query 345 TCAAAGTCAACTACGGAGGTGGAGACTCCACGAGGAGAAAGGATGAGGAGGAAGAGCTGC 404
||||||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 388 TCAAAGTCAGCGCCGGAGGTGGAGACACCACGAGTAGAAAGGATGAGGAGGAAGAGCTGC 447
Query 405 GTGGTAACCACACACGTTGAAGC-GTCTTCTCCAATTTCCTGTGCCGGCGCGTGGAGTTT 463
|| || || ||||||| | || | |||| || | || ||||||||||||||||||
Sbjct 448 GTAGTGACTACACACGCCGCAGATG-CTTCGCCTCTCACCAATGCCGGCGCGTGGAGTTT 506
Query 464 AAACGCGCGTAGGAGAAGCTTTGATGAGAAAGACGTGAAAGATTTGAAGAAGAGTGATCA 523
|||||||||||| |||||||||||||||||||| | || |||||||||||||||
Sbjct 507 AAACGCGCGTAGAAGAAGCTTTGATGAGAAAGA--T------TT-GAAGAAGAGTGATCA 557
Query 524 GAAGCTGAACATAAGGTTTTGTGAGAGTCTCTATTCGGTCCAAAGGGTTGAGTGTAAAA- 582
|||| |||||||||| |||||||||||||| ||||||| ||||||||||||| ||||
Sbjct 558 GAAGTTGAACATAAGATTTTGTGAGAGTCTGTATTCGGACCAAAGGGTTGAGAC-AAAAG 616
Query 583 ATCCAAGTGCAGGAGATGAGAATGATGTAAATGGTGGATGCGAGAGTGATTCAAGTTCTG 642
| |||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 617 ACCCAAATGCAGGAGACAAGAACGATGTAATTGGTGGATGCGAGAGTGATTCAAGTTCTG 676
Query 643 AATCTGATCTTTTTGAGTTGGATTTGTTTGCTAAAACAAACCCCTAATGAAGAACGGTCC 702
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 677 AATCTGATCTTTTTGAGTTGGATTTGTTTGCTAAATCAAACCCCTAATTAAGAACGGTCC 736
Query 703 GGAAAAT 709
||| |||
Sbjct 737 GGAGAAT 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34360156548
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5