BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920254
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13700.1 | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr... 1389 0.0
> AT1G13700.1 | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr1:4694372-4696023
REVERSE LENGTH=1018
Length=1018
Score = 1389 bits (752), Expect = 0.0
Identities = 816/848 (96%), Gaps = 0/848 (0%)
Strand=Plus/Plus
Query 1 TGAAACAACATAGGAAGCAATATGGCACTTACTTGGACTCATAAAGACAGAGGAGAAATT 60
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 88 TGAAACAACAGAGGAAGCAATATGGCACTTACTTGGACTCATAAAGACAGGGGAGAAATT 147
Query 61 CGGGTTCATGAAAATTTGGAGGAACTAAGCATAGACTTGGTAGATTATATAGCTGAGATA 120
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 148 AGGGTTCATGAGAATTTGGAGGAACTAAGCATAGACTTGGTTGATTATATAGCTGAGATA 207
Query 121 TCAGAAGCATCAATTAAAGAACATGGTGCTTTCTGCATTGTGTTATCAGGAGGCTCTCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 TCAGAAGCATCAATTAAAGAACATGGTGCTTTCTGCATTGTGTTATCAGGAGGCTCTCTC 267
Query 181 ATTAGCTTCATGGGAAAATTGATCGAGCCGCCTTACGACAAGATTGTCGATTGGGCAAAA 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 268 ATTAGCTTCATGGGAAAATTGATCGAGCCGCCTTACGACAAGATTGTAGATTGGGCGAAA 327
Query 241 TGGTATGTTTTCTGGGCGGATGAGCGTGTGGTAGCTAAGAGTCATGACGACAGCAACTAC 300
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 328 TGGTATGTTTTCTGGGCGGATGAGCGTGTGGTAGCTAAGAATCATGACGATAGCAACTAC 387
Query 301 AAGCTAGCCAAAGATAATTTACTGTCCAAGGTAAATGTGTTTCCGAGACATATATGTTCC 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 388 AAGCTAGCCAAAGATAATTTACTCTCCAAGGTAAATGTGTTTCCGAGACATATATGTTCC 447
Query 361 ATTAACGACACAGTTTCGGTGGAGGAAGCTGCAACAGAGTATGAATTCGCCATCAGACAG 420
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 448 ATTAACGACACAGTTTCAGCGGAGGAAGCTGCAACAGAGTATGAATTCGCCATCAGACAG 507
Query 421 ATGGTGAGAACACGAACCGTGGCTGCGTCAGACAACAGTGACAGTCCCAGGTTTGATCTG 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 ATGGTGAGATCACGAACCGTGGCTGCGTCAGACAACAGTGACAGTCCCAGGTTTGATCTG 567
Query 481 ATCTTGCTTGGGATGGGCTCAGATGGGCATGTAGCCTCGCTCTTCCCGAACCATCCAGCA 540
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 568 ATCTTGCTTGGGATGGGCTCAGATGGACATGTAGCCTCACTCTTCCCGAACCACCCAGCA 627
Query 541 CTTGAGGTGAAGGACGATTGGGTTACGTTCCTAACCGACTCTCCTAAACCGCCACCAGAG 600
||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 628 CTTGAGGTGAAGGACGATTGGGTCACATTCCTAACCGACTCTCATAAACCGCCACCAGAG 687
Query 601 AGAATCACATTCACTTTGCCCGTCATTAACTCAGCTGCTAACGTTGTTGTCGTAGCAACC 660
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 688 AGAATCACATTCACTTTGCCCGTCATCAACTCAGCTGCTAACGTTGTCGTAGTAGCAACC 747
Query 661 GGCGAATCCAAAGCCAATGCTATGCACTTAGCAATCGATGATTTGCCCTTACCAGAAACC 720
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 748 GGCGAATCCAAAGCCAATGCTATCCACTTAGCAATCGATGATTTGCCCTTACCAGACAGC 807
Query 721 TCTCTGTCTCTGCCTGCAAGGCTGGTCCAGCCGAGCAATGGGAATCTGATTTGGTTTATG 780
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 808 TCTCTGTCTCTGCCTGCAAGGCTAGTCCACCCGAGCAATGGGAATCTGATTTGGTTTATG 867
Query 781 GATAAACCAGCAGGGTCTAAACTTGACAGGTTTAAATTTTCTGAGTAGGATTTAGATTTT 840
||||||| ||| |||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 868 GATAAACAAGCGGGGTCTAAGCTTGACAGGTTTAAATTTTCCGAGTAGGATTTAGGTTTT 927
Query 841 CTTCTTTG 848
||||||||
Sbjct 928 CTTCTTTG 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5