BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920261
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13750.1 | Symbols: | Purple acid phosphatases superfamily ... 1480 0.0
> AT1G13750.1 | Symbols: | Purple acid phosphatases superfamily
protein | chr1:4715394-4718235 REVERSE LENGTH=2082
Length=2082
Score = 1480 bits (801), Expect = 0.0
Identities = 1228/1434 (86%), Gaps = 30/1434 (2%)
Strand=Plus/Plus
Query 57 TTTGATCTGAATGAACAAGCTTATATCAAAGCCTCTCCAACAGTTCTTGGATCTGATGGT 116
|||| ||| |||||| |||||||| ||||||| ||||||||||||||||||||| | |||
Sbjct 262 TTTGGTCTCAATGAAAAAGCTTATGTCAAAGCATCTCCAACAGTTCTTGGATCTAACGGT 321
Query 117 CAACATATG-GAGTGGGTGTTGGTTGAATATAGTTCTCCGTACCCATCAGATGACGATTG 175
||||||| | || | || ||||| |||||||||||||| | ||||| ||||| |||||
Sbjct 322 CAACATA-GTGAATTAGTATTGGTCCAATATAGTTCTCCGAAACCATCTGATGATGATTG 380
Query 176 GATCGGAGTGTTCTCTCCAGGGGATTTCAATGCTTCGATTTGTCCTGCAGA-AATAAAAT 234
||| |||||||| ||||| | |||||||||||||||| |||||| | ||| || |||||
Sbjct 381 GATTGGAGTGTTTTCTCCTGCAGATTTCAATGCTTCGACTTGTCCAGGAGATAACAAAAT 440
Query 235 ACGTTGATCCACCTCTACTGTGTTCTGCGCCTATCAAGTTTCAGTATGCTAA-TTATAGC 293
|| | ||||||| ||| ||||| |||||| |||||||||| ||||| || || |||
Sbjct 441 -GGTCCAACCACCTCGACTTTGTTCAGCGCCTGTCAAGTTTCAATATGCAAACTT-TAGT 498
Query 294 AA-CGCAAGATACA-CAAGTACAGGGTA-TGCTTCTTTGAAGCTACAACTCATCAATCAG 350
|| | ||||||||| ||| ||| || | || ||| |||||||| ||||| || || ||
Sbjct 499 AATC-CAAGATACACCAA-TAC-TGGAACTGGTTCCTTGAAGCTTCAACTGATTAACCAA 555
Query 351 CGAGCAGATTTTTCCTTTG-GACTCTTTTCTGGCGGTTTGTTGAAT-CCAACGCTTGTGG 408
|| | ||||| ||||| | | |||||||||||||||||||||||| |||| ||||||||
Sbjct 556 AGATCGGATTTCTCCTTCGCG-CTCTTTTCTGGCGGTTTGTTGAATCCCAA-GCTTGTGG 613
Query 409 CTGTCTCAAACAAGGTAGTC-TTTGAGAACCCAAATGCACCACTTTACCCACGTTTGGCA 467
| |||||||||| |||| | |||||||| ||||| |||||| |||| || || |||||
Sbjct 614 CAATCTCAAACAAAGTAG-CTTTTGAGAATCCAAACGCACCAGTTTATCCGCGGTTGGCG 672
Query 468 CTAGGGAAAGAATGGGATGAAATTACAGTGACGTGGACTAGTGGGTATGGACTCGACATA 527
||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||| || ||
Sbjct 673 CTAGGCAAAGAATGGGATGAAATGACAGTGACATGGACTAGTGGTTATGGACTCAACCTA 732
Query 528 GCAGAACCTGTAGTGGAGTGGGGCATT-ATGGAAGGAGAGCGTAAATTCTCGCCTGCTGG 586
|| |||||||| || ||||||||| || | || |||||| |||||| | || ||||||||
Sbjct 733 GCTGAACCTGTTGTTGAGTGGGGCGTTAAAGG-AGGAGAACGTAAACTGTCACCTGCTGG 791
Query 587 AACTTTGACCTTCGGGCGTAACAGCATGTGTGGGGATCCTGCTAGAACCGTGGGCTGGTG 646
||| |||||||||| ||||||||||||||| || | |||||| || |||||||| ||| |
Sbjct 792 AACATTGACCTTCGCGCGTAACAGCATGTGCGGTGCTCCTGCAAGGACCGTGGGATGGCG 851
Query 647 TGATCCCGGTTACATACACACTGCATTTCTCAAAGAGTTGTGGCCTAATTCCAAGTACAC 706
||||||||| ||||||||||| || |||||||||||||| ||||| || |||||||| ||
Sbjct 852 TGATCCCGGATACATACACACAGCTTTTCTCAAAGAGTTATGGCCAAACTCCAAGTATAC 911
Query 707 ATATAGAGTTGGGCATAAATTGTTCAGTGGTGCACACATCTGGAGTAAAGAGA-ATCAGT 765
|| |||||||| |||| ||||| || ||||||| |||||||||||||| | |||| |
Sbjct 912 CTACAGAGTTGGTCATAGATTGTCCAATGGTGCATTGATCTGGAGTAAAGA-ATATCAAT 970
Query 766 TTAAATCTTCTCCTTTCCCAGGCCAAGATTCTCTCCAGCGTGTGGTAATCTTCGGAGACA 825
| ||||||||||||||||| || ||| | ||| |||| | || |||||||| |||||||
Sbjct 971 TCAAATCTTCTCCTTTCCCGGGACAAAACTCTGTCCAACAAGTTGTAATCTTTGGAGACA 1030
Query 826 TGGGAAAGGCTGAAGTTGATGGCTCAAATGAGTACAAAGATTTTCAACGCGCTTCTCTCA 885
|||||||||| ||||| |||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 1031 TGGGAAAGGCAGAAGTCGATGGCTCAAGCGAGTACAATGATTTCCAACGCGCTTCTCTCA 1090
Query 886 ACACCACAAAGCAGCTTATTCGAGATCTAAAGAACACTGATGCAGTTTTCCATATCGGAG 945
||||||||||||| |||||| |||||||||||| ||||||||||||||||| || ||||
Sbjct 1091 ACACCACAAAGCAACTTATTAAAGATCTAAAGAAGACTGATGCAGTTTTCCACATTGGAG 1150
Query 946 ATATCTGTTATGCAAATGGATACCTTTCGCAGTGGGATCAATTCACAGCGCAAATCGAGC 1005
|||| ||||||||||||||||||||||| || ||||| ||||||| ||| || || ||||
Sbjct 1151 ATATTTGTTATGCAAATGGATACCTTTCTCAATGGGACCAATTCATAGCACAGATTGAGC 1210
Query 1006 CAATTGCTTCCACTGTCCCATACATGATTGCAAGTGGAAACCATGAGCATGTCTGGCCCA 1065
| |||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct 1211 CTATTGCTTCCACTGTTCCATATATGATTGCAAGCGGAAACCATGAGCGTGTCTGGCCCA 1270
Query 1066 ACTCAGGATCGTTTTACCAGGGTTTAGACTCTGGAGGAGAATGTGGTGTACCAGCTCAGA 1125
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1271 ACTCAGGATCGTTTTACGAGGGTTTAGACTCTGGAGGAGAATGTGGTGTTCCAGCTGAGA 1330
Query 1126 CAATGTTCTACGTTCCTGCTCAAAACAGAGCTAAGTTCTGGTACTCAAGTGACTATGGTA 1185
|||||||||| |||||||||||||||||||||||| |||||||||| |||||||| || |
Sbjct 1331 CAATGTTCTATGTTCCTGCTCAAAACAGAGCTAAGGTCTGGTACTCGAGTGACTACGGAA 1390
Query 1186 TGTTCAGGTTCTGCGTGGCCAACACAGAAC-TCGACTGGAGAGAAGGAACAGAGCAGTAC 1244
|||| |||||||| ||||| ||||||||| | ||||||||||||||||||||||| |||
Sbjct 1391 TGTTTAGGTTCTGTGTGGCTGACACAGAACAT-GACTGGAGAGAAGGAACAGAGCAATAC 1449
Query 1245 AACTTCATTGAACACTGCTTAGCATCAGTCGACAGGGAAAAACAACCGTGGCTGATATTC 1304
|| ||||||||||||||||||||||||||||||||| |||| || || ||||||||||||
Sbjct 1450 AATTTCATTGAACACTGCTTAGCATCAGTCGACAGGCAAAAGCAGCCATGGCTGATATTC 1509
Query 1305 CTTGCTCATCGCGTGCTCGGTTATTCCT-CAGCAGACTTGTACGCTG-AGCAAGCCTCTT 1362
|| ||||| || || ||||||||||| | || || | || || || | || ||| |||||
Sbjct 1510 CTCGCTCACCGTGTTCTCGGTTATTCTTCCA-CATATTTTTATGCGGAAG-AAGGCTCTT 1567
Query 1363 TCGCAGAGCCGATGGGAAGAGATAGCCTTCAAAAGCTCTGGCAGAAGTACAAAGTCGACA 1422
| || || || ||||||||||| || ||||| ||| | ||||||||||||||||||||||
Sbjct 1568 TTGCCGAACCTATGGGAAGAGAAAGTCTTCAGAAGTTATGGCAGAAGTACAAAGTCGACA 1627
Query 1423 TTGC-AGTCTATGGCCATGCACATAACTACGAGAGAACATGCCCGGTTTACCAG 1475
|||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 TTGCTA-TCTATGGCCATGCACATAACTACGAGAGAACATGCCCGGTTTACCAG 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78714454560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5