BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920262
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13770.1 | Symbols: RUS3 | Protein of unknown function, DUF6... 2196 0.0
> AT1G13770.1 | Symbols: RUS3 | Protein of unknown function, DUF647
| chr1:4721695-4724510 FORWARD LENGTH=1510
Length=1510
Score = 2196 bits (1189), Expect = 0.0
Identities = 1296/1349 (96%), Gaps = 2/1349 (0%)
Strand=Plus/Plus
Query 1 GTAAGAAGCCAAAATTCGCCATGAGAGAAGAAGAAGTCTCTGATTGCGGATCAATTA-TA 59
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 3 GTAAGAAGCCAAAATTCGCCATGAGAGAAGAACAAGTCTCTGATTGCGGATCGATTACT- 61
Query 60 CTTGAAGAATGGAATGGTTCTTCTTCTACTAAGTTATTCAAAACAGCAACCATCACTGCC 119
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 62 CTTGAAGAATGGAATGGTTCTTCTTCCACTAAGCTATTCAAAACAGCAACCATCACTGCC 121
Query 120 TCCTCTTCTCTCTCCATCCAAAGGTCTGCTAATCGCTTCAATCATGTATGGAGACGAGTT 179
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 122 TCCTCTTCTCTCTCTATCCAAAGGTCTGCTAATCGCTTTAATCATGTGTGGAGACGAGTT 181
Query 180 CTTCAAGCATTTGTACCAGAGGGCTTTCCTGGTAGTGTAACTCCGGATTATGTAGGGTTT 239
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 182 CTTCAAGCATTTGTACCAGAGGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTT 241
Query 240 CAGTTATGGGACACATTACAGGGGCTCTCAACTTATATAAAGATGATGCTTTCCACTCAG 299
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 242 CAGTTATGGGACACATTACAGGGCCTCTCAACTTATACAAAGATGATGCTTTCCACTCAG 301
Query 300 GCTCTTTTGAGTGCAATTGGGGTCGGTGAGAAATCTGCAACAGTTATAGGTGCTACATTT 359
|||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||
Sbjct 302 GCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGTGCTACATTT 361
Query 360 CAGTGGTTTTTGAGGGATTTTACTGGGATGCTTGGAGGCATATTGTTCACATTCTATCAG 419
||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 362 CAGTGGTTTCTGAGGGATTTTACTGGGATGCTTGGAGGTATATTGTTCACATTTTATCAG 421
Query 420 GGTTCTAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAACGAT 479
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 422 GGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGAT 481
Query 480 ATCGGAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTGTGGTT 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ATTGGAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTGTGGTT 541
Query 540 TGCTTAGGGAGCCTATCAAGATCATTTACTGGTGTTGCAAGTGGAGCAACCAGAGCAGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGCTTAGGGAGCCTATCAAGATCATTTACTGGTGTTGCAAGTGGAGCAACCAGAGCAGCT 601
Query 600 CTAACACAGCACTTTGCTCTTCAAGACAATGCTGCGGATATATCTGCTAAGGAAGGAAGC 659
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 602 CTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAGGAAGGAAGC 661
Query 660 CAAGAGACTATGGCAACTATGATGGGGATGTCATTGGGAATGTTGCTAGCTCGGTTTACC 719
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 662 CAAGAGACTATGGCAACTATGATGGGTATGTCATTGGGAATGTTGCTAGCTCGGTTTACC 721
Query 720 TCTGGAAACCCTATGGGTATTTGGTTTTCGTTTCTCTCTCTCACCGTGTTTCATATGTAT 779
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 722 TCTGGAAACCCTATGGCTATTTGGCTTTCGTTTCTCTCTCTCACCGTGTTTCATATGTAT 781
Query 780 GCAAACTATAGAGCTGTCCGGTGTCTTGTATTGAATTCATTAAACTTCGAGAGGAGTTCG 839
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 782 GCAAACTATAGAGCTGTCCGGTGTCTTGTATTGAATTCATTAAACTTTGAGAGGAGTTCA 841
Query 840 ATTCTTCTAACACATTTCATGCAAACTGGCCAAGTTCTCTCCCCCGAACAGGTTTCTTCA 899
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 842 ATTCTTCTAACACATTTCATTCAAACTGGCCAAGTTCTCTCTCCCGAACAGGTTTCTTCA 901
Query 900 ATGGAGGGTGTATTGCCCATGTGGGCCACTTCATTGAGGTCAACTAATTTAAAGCTACTG 959
|||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| | ||
Sbjct 902 ATGGAGGGTGTATTGCCCTTGTGGGCCACTTCATTGAGGTCAACGAATTCAAAGCCATTG 961
Query 960 CATAAGAGAGTGCACTTAGGTGTAAGAGTTTCTTCTCTCCCTCGTCTAGAAATGATGCAG 1019
|||||||||||||| |||||||| |||||||| ||||||||||||||||| ||| |||||
Sbjct 962 CATAAGAGAGTGCAGTTAGGTGTGAGAGTTTCCTCTCTCCCTCGTCTAGATATGTTGCAG 1021
Query 1020 CTGCTAAATGGTGTTGGAGCTTCTTCATACAAGAATGCTAAGTACTTATTGGCTCACAGA 1079
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1022 CTGCTAAATGGTGTTGGAGCTTCTTCATACAAGAATGCTAAGTATTTATTGGCTCACATA 1081
Query 1080 AAGGGAAATGTTAGTGTGATCTTGCACAAAGATTCATCGGCTGCAGATGTGTTGAAATCA 1139
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1082 AAGGGAAATGTTAGTGTGATCTTGCACAAAGATTCAAAACCTGCAGATGTGTTGAAATCA 1141
Query 1140 TATATTCATGCCATTGTTTTGGCAAACCTTATGGAAAAAAGCACATCTTTCTATTCAGAA 1199
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1142 TATATTCATGCCATTGTTTTGGCAAACCTTATGGAAAAGAGCACATCTTTTTATTCAGAA 1201
Query 1200 GGAGAAGCTTGGATTGATAAACACTACGACGAATTTCTCCACAAGCTGAGATCAGGAGGT 1259
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1202 GGAGAAGCTTGGATTGATAAACACTATGACGAATTGCTCCACAAGCTGAGATCAGGAGGT 1261
Query 1260 TGGAAAACAGAGCGTCTTCTTTCGCCTTCCATTACTTGGAGAGCAAATTGGATATCTCAC 1319
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1262 TGGAAAACAGAGCGTCTTCTTTCGCCTTCCATTACTTGGAGAGCTAATTGGATATCTCAC 1321
Query 1320 ACTTCCGCTGCTAAGATCGACTGAGCTTT 1348
||||||||||||||| |||||||||||||
Sbjct 1322 ACTTCCGCTGCTAAGTTCGACTGAGCTTT 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5