BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920264
Length=2693
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3784 0.0
AT1G14090.1 | Symbols: | pseudogene, pentatricopeptide (PPR) r... 2451 0.0
AT2G26790.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 93.5 1e-17
> AT1G13800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4731056-4733707 REVERSE LENGTH=2652
Length=2652
Score = 3784 bits (2049), Expect = 0.0
Identities = 2463/2664 (92%), Gaps = 24/2664 (1%)
Strand=Plus/Plus
Query 22 ATGCGGGTTATCCCGAGTT-CATTACTCTCACATGTGAGAGGACTGATTCGA-AGAGGAC 79
||||||||| | |||| || ||||||||||||||||||||||| |||||||| | |||||
Sbjct 1 ATGCGGGTTTTTCCGA-TTCCATTACTCTCACATGTGAGAGGATTGATTCGACA-AGGAC 58
Query 80 CCTCTTCGCGATGGTACGTGGTTCCTGCACTTTCCCGGACGAACATTACAATCTCACACT 139
|||||||||||| |||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 59 CCTCTTCGCGATTCTACGTGGTTCCTGCACTTGCCCGGACAAACCTTACAATCTCACACT 118
Query 140 CAGAGCAAGTGAAAGAAGGTACCTTTGATTATAAAGCATTGGAGTTAAATGAAATTGGGG 199
| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 119 CTGAGCAAGTAAAAGAAGGTACTTTTGATTATAAAGCATTGGAGTTAAATGACATTGGGG 178
Query 200 TTCTTCGAGTATTGAATAGTATGAAGGATGATCCTTATCTTGCTTTATCGTTTCTCAAAC 259
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 TTCTTCGTGTGTTGAATAGTATGAAAGATGATCCTTATCTTGCTTTATCGTTTCTCAAAC 238
Query 260 GAATTGAAGGAAATGTGGCTTTGCCTAGTGTCCAAGCTTATGCAACTGTTATCAGAATTG 319
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 GAATTGAAGGAAATGTGACTTTGCCTAGTGTCCAAGCTTATGCAACTGTTATCAGAATCG 298
Query 320 TTTGTGGTTGGGGTTTAGATCAGAAACTGGATACTTTTCTAGTGGAACTCGTTAGAAAAG 379
|||||||||||||||| ||| ||||| |||||||||||||| | ||||||||||||| ||
Sbjct 299 TTTGTGGTTGGGGTTTGGATAAGAAATTGGATACTTTTCTATTTGAACTCGTTAGAAGAG 358
Query 380 GAGATGAGGGACGCGGTTTCAGTGTTATGGATTTGTTAAAGGCCATTGGAGAAATGGAGC 439
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 359 GAGATGAGGGACGCGGTTTCAGTGTAATGGATTTGTTAAAGGCCATTGGAGAAATGGAAC 418
Query 440 AGTCATTGGTGTTGTTGATACGGGTCTCCACTGCATTGGTTAAAGCCTATGCTAATCTTG 499
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 419 AGTCATTGGTGTTGTTGATTCGAGTCTCCACTGCATTGGTTAAAGCCTATGCTAATCTTG 478
Query 500 AAATGTTTGAGGAAGCTATCGATAttttttttCAAACTTATC-ATTCCCTAGGACGTGCT 558
| |||||||| |||||||| |||||||| || | | |||| | |||| ||||||||||||
Sbjct 479 ATATGTTTGACGAAGCTATTGATATTTTCTTCCGAGCTTA-CTATTCTCTAGGACGTGCT 537
Query 559 CCGGATATAAAGGCATTGAATGTTTTGATGAACCGTATGATTGCTTCTGGGAGAACTGAT 618
||||||||||||||||||||| ||||||| | |||||||||||| |||||||||| ||||
Sbjct 538 CCGGATATAAAGGCATTGAATTTTTTGATCAGCCGTATGATTGCATCTGGGAGAAGTGAT 597
Query 619 ATGGTGGTTGGTGTTTTCTGGGAAATAGAGAGGCT-GGGTTTGGATGCGGATGCACATAC 677
|||||||||||| ||||||||||||||||| | || ||| |||||||| |||||||||||
Sbjct 598 ATGGTGGTTGGTTTTTTCTGGGAAATAGAGCGTCTCGGG-TTGGATGCAGATGCACATAC 656
Query 678 ATATGTGCTGGTGGTTCAAGCATTGTGTAGGAATGAGGATAAAGAAGGGGTAGATAAGCT 737
||||| || ||||||||||||||||| |||||||| ||||| |||| |||| |||||
Sbjct 657 TTATGTTCTTGTGGTTCAAGCATTGTGGAGGAATGATGATAAGGAAGAATTAGAGAAGCT 716
Query 738 TCTTATTAGACTGTTAAACTCAGAGACGAGGAATCCTTGCGTGTTTTATTTGAATTTCAT 797
||||| ||||||||||| ||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct 717 TCTTAGTAGACTGTTAATCTCAGAGACTAGGAACCCTTGCGTATTTTATTTGAATTTTAT 776
Query 798 TGAAGGACTATGTTTAAATCAGATGGCAGGCATGGCGTATCTTCTACTCCAACCATTGAG 857
||||||||| ||||| ||||||||| ||| || || ||| |||||||||||||||||||
Sbjct 777 TGAAGGACTGTGTTTGAATCAGATGACAGATATAGCTTATTTTCTACTCCAACCATTGAG 836
Query 858 GGAAGTGAATATTCTGGTGGATAAGAGTGATCTTGGAATTGCATATCGCAGAGTGGTTCG 917
||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 837 GGATGCAAATATTCTGGTGGATAAGAGTGATCTTGGAATTGCATATCGCAAAGTGGTGCG 896
Query 918 TGGTTTATGTAATGAGATGAGAATAGAAGATGCTGAAAAAGCTT-TTCTTGACATGGAGG 976
|||||||||| ||||||||||||||||||| ||||||| | || ||||||||||||||
Sbjct 897 TGGTTTATGTTATGAGATGAGAATAGAAGACGCTGAAAGTG-TTGTTCTTGACATGGAGA 955
Query 977 AGCACGGGATTGATCCGGATGTCTATGTTTACTCGGCGATAATTGAGGGACATCGCAAGA 1036
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AACATGGGATTGATCCGGATGTCTATGTTTACTCGGCGATAATTGAGGGACATCGCAAGA 1015
Query 1037 CTATGAATATACCTAAAGCTTTTGATATTTTTAACAAAATGGTGGAGAAAGGAAAAAGAA 1096
||||||||||||||||||| | ||| |||||||||||||| || ||||| |||||||||
Sbjct 1016 ATATGAATATACCTAAAGCTGTGGATGTTTTTAACAAAATGTTGAAGAAAAGAAAAAGAA 1075
Query 1097 TAAATTGTGTGATTGGAAGTTCGATCCTTCAGTGCTGTTGTCAGATGGGAAATTTCTCAG 1156
|||| |||||||||| ||| || |||||||| |||| ||||||||||||||||||||| |
Sbjct 1076 TAAACTGTGTGATTGTAAGCTCAATCCTTCAATGCTATTGTCAGATGGGAAATTTCTC-G 1134
Query 1157 G-AGCTTATGATCTGTTTGAAGAGTTTAGAGAGTTGAACATTCCTCTTGATAGGGTTTGC 1215
| |||||||||||| ||| |||||||||||||| ||||||| |||||||||| ||||||
Sbjct 1135 GAAGCTTATGATCTATTTAAAGAGTTTAGAGAGACGAACATTTCTCTTGATAGAGTTTGC 1194
Query 1216 TACAATGTTGCATTTGATGCTTTGGGAAAGCTTGGCAAAGTAGAAGAAGCTATTGAGCTG 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1195 TACAATGTTGCATTTGATGCTTTGGGAAAGCTTGGCAAAGTAGAAGAAGCTATTGAGTTG 1254
Query 1276 TTCCGAGAAATGACGGGTAAAGGAATAGCTCCTGACGTCATCAACTACACGACGTTGATA 1335
||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1255 TTCAGAGAAATGACGGGTAAAGGAATAGCTCCTGATGTCATCAACTACACGACTTTGATA 1314
Query 1336 GGTGGTTGCTGTCTACAAGGTAAATGTTCTGATGCTTTTGATTTGATGATTGAAATGGAC 1395
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1315 GGGGGTTGCTGTCTACAAGGTAAATGTTCTGATGCCTTTGATTTGATGATTGAAATGGAC 1374
Query 1396 GGATCAGGTAAAACACCTGATATTGTTATATATAACGTACTTGCTGGTGGATTGGCTAGG 1455
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1375 GGAACAGGTAAAACACCTGATATTGTTATATATAACGTACTTGCTGGTGGATTGGCTACG 1434
Query 1456 AATGGTCTTACCCAAGAGGCACTT-GAAACTTTGAAACTGATGGAAGATCGGGGGGTAAA 1514
||||||||| | ||||||||| || |||||| ||||| |||||||| ||||||| |||||
Sbjct 1435 AATGGTCTTGCACAAGAGGCA-TTCGAAACTCTGAAAATGATGGAAAATCGGGGTGTAAA 1493
Query 1515 ACCCACTTATGTTACACAAAATATGGTCATTGAAGGCCTGATTGTTGCAGGTAAACTAGA 1574
|||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||
Sbjct 1494 ACCCACTTATGTTACACACAACATGGTCATTGAAGGCCTGATTGATGCAGGTGAACTAGA 1553
Query 1575 CAAGGCTGAAGCTTTCTATGAGAGTTTGGAACATAAGTCTCGGGAAAATGATGCAAGTAT 1634
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1554 CAAGGCTGAAGCTTTCTATGAGAGTTTGGAACATAAATCTCGGGAAAACGATGCAAGTAT 1613
Query 1635 GGTTAAAGGCTATTGTGAAGCTGGCTGTCTTGATCAGGCATTTGAACGATTCATTAGACT 1694
||| || || | ||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1614 GGTGAAGGGTTTTTGTGCCGCTGGCTGTCTTGATCATGCCTTTGAACGATTCATTAGACT 1673
Query 1695 GGAATTTCCTCTGCCCAAGAGTGTGTATTTTACTCTATTCACTAGTCTTTGCTCTGAGAA 1754
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1674 GGAATTTCCTCTGCCCAAGAGTGTGTATTTTACTCTATTCACTAGTCTTTGCGCCGAGAA 1733
Query 1755 -GAATCATATCAGCAAAGCTCAAGACTTACTGGATAGAATGTGGGAACTTGGAGTCGAAC 1813
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1734 AGATT-ATATCAGCAAAGCTCAAGACTTACTGGATAGAATGTGGAAACTTGGAGTCGAAC 1792
Query 1814 CTGAGAAGAGCATGTATGGAAAGTTAATTGGTGCATGGTGTCGAGTTAATAATGTGAGAA 1873
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1793 CTGAGAAGAGCATGTATGGAAAGTTAATTGGTGCTTGGTGTCGAGTTAATAATGTGAGAA 1852
Query 1874 AAGCCCGGCAGTTTTTTGAAATTTTAGTTACTAATGAGATTATCCCTGATTTGTTCACTT 1933
|||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1853 AAGCCCGGGAGTTTTTTGAAATTTTAGTTACTAAAAAGATTGTCCCTGATTTGTTCACTT 1912
Query 1934 ACACAATCATGATTAACACCTATTGCCGGTTAAACGAGCTGAAGCAAGCCTATGCTCTTT 1993
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1913 ATACAATCATGATTAACACCTATTGCCGGTTAAACGAGCCGAAGCAAGCCTATGCTCTTT 1972
Query 1994 TTCAAGACATGAAGAGGAGAGATGTCAAGCCTGATGTGGTAACATACACAGTTTTACTCA 2053
|| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1973 TTGAAGACATGAAGAGGAGAGATGTCAAACCTGATGTGGTAACATACTCAGTTTTACTCA 2032
Query 2054 ATAGCAATCCAGAGTTGGATATGAAGAGGGAAATGGAAGCCTTTGATGTTAAACCAGACG 2113
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2033 ATAGCGATCCAGAGTTGGATATGAAGAGGGAAATGGAAGCCTTTGATGTTATTCCAGACG 2092
Query 2114 TTGTCTTA-TACACAATCATGATTAACAGATATTGCCAGTTAAACGACGTGAAGAAAGCC 2172
| |||| | ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 2093 TCGTCT-ACTACACAATCATGATTAACAGATATTGCCATTTAAACGACCTGAAGAAAGTC 2151
Query 2173 TATGCTCTTTTTAAAGACATGAAGAGGAGAGAAATCGTACCTGATGTGGTAACATACACA 2232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 TATGCTCTTTTTAAAGACATGAAGAGGAGAGAAATCGTACCTGATGTGGTAACATACACA 2211
Query 2233 GTTTTGCTCAAAAACAATCCAGAACTGGA-TCTTACGAGGGAAATGAAAGCCTTTGATGT 2291
||||| ||||||||||| ||||||| ||| |||| | |||||||||||||||||||||||
Sbjct 2212 GTTTTACTCAAAAACAAACCAGAAC-GGAATCTTTCAAGGGAAATGAAAGCCTTTGATGT 2270
Query 2292 TAAACCAGACGTTTTCTACTACACAGTTTTGATTGATTGGCAGTGCAAGATTGGTGATCT 2351
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2271 TAAACCAGACGTTTTCTACTACACGGTTTTGATTGATTGGCAGTGCAAGATTGGGGATCT 2330
Query 2352 TAGAGAGGCGAAAGGAATCTTTGATCAAATGATCGAAAGTGGGGTGGATCCTGATGCTGC 2411
| ||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2331 TGGAGAGGCGAAAAGAATTTTTGATCAAATGATCGAGAGTGGGGTGGATCCTGATGCTGC 2390
Query 2412 ACCTTACACAGCACTAATAGCTGGTTGTTGTAAGATGGGAAATCTTAAAGAGGCGAAAAT 2471
||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||
Sbjct 2391 GCCTTACACAGCACTAATAGCTTGTTGCTGTAAGATGGGATATCTTAAAGAGGCAAAAAT 2450
Query 2472 GATCTTTGATCTGA-TGATTGAAAGTGGGTTAAAGCCTGATTTTGTGTCTTACACAACAC 2530
||||||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 2451 GATCTTTGATC-GAATGATTGAAAGTGGGGTAAAGCCTGATGTTGTGCCTTACACAGCGT 2509
Query 2531 TAATAGCTGGTT-TTCGTAGGAATGGGTTTGTACGTAAGGCATTCACACTTATGAAAGAG 2589
|||||||||||| || |||||||||| ||||||| ||||||| ||| |||| ||||||||
Sbjct 2510 TAATAGCTGGTTGTT-GTAGGAATGGATTTGTACTTAAGGCAGTCAAACTTGTGAAAGAG 2568
Query 2590 ATGTTGGAAAAGGGGATTAAGCCGACTGAAGCTTCCCTGTCTGCAGTACACTATGCTAAA 2649
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 2569 ATGTTGGAAAAGGGGATTAAGCCGACTAAAGCTTCTCTGTCTGCAGTACACTATGCTAAA 2628
Query 2650 TCAAAGGCCAAGGGACTCCGATGA 2673
| ||||||||||||||||||||||
Sbjct 2629 TTAAAGGCCAAGGGACTCCGATGA 2652
Score = 198 bits (107), Expect = 2e-49
Identities = 169/198 (85%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 1933 TACACAATCATGATTAACACCTATTGCCGGTTAAACGAGCTGAAGCAAGCCTATGCTCTT 1992
||||||||||||||||||| ||||||| |||||||| |||||| ||| ||||||||||
Sbjct 2101 TACACAATCATGATTAACAGATATTGCCATTTAAACGACCTGAAGAAAGTCTATGCTCTT 2160
Query 1993 TTTCAAGACATGAAGAGGAGAGATGTC-AAGCCTGATGTGGTAACATACACAGTTTTACT 2051
||| ||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 2161 TTTAAAGACATGAAGAGGAGAGAAATCGTA-CCTGATGTGGTAACATACACAGTTTTACT 2219
Query 2052 CAATAGCAATCCAGAGTTGG-AT-ATGAAGAGGGAAATGGAAGCCTTTGATGTTAAACCA 2109
||| | ||| ||||| || || | | ||||||||| ||||||||||||||||||||
Sbjct 2220 CAAAAACAAACCAGA-ACGGAATCTTTCA-AGGGAAATGAAAGCCTTTGATGTTAAACCA 2277
Query 2110 GACGTTGTCTTA-TACAC 2126
|||||| ||| | |||||
Sbjct 2278 GACGTTTTCT-ACTACAC 2294
> AT1G14090.1 | Symbols: | pseudogene, pentatricopeptide (PPR)
repeat-containing protein, contains Pfam profile PF01535: PPR
repeat; blastp match of 33% identity and 1.5e-16 P-value
to GP|20219038|gb|AAM15782.1|AC104428_3|AC104428 Putative indole-3-acetate
beta-glucosyltransferase {Oryza sativa (japonica
cultivar-group)} | chr1:4824433-4827436 REVERSE LENGTH=3004
Length=3004
Score = 2451 bits (1327), Expect = 0.0
Identities = 1899/2164 (88%), Gaps = 83/2164 (4%)
Strand=Plus/Plus
Query 1 CACAAGATCGGAAAATATTTCATGCGGGTTATCCCGAGTTCATTACTCTCACATGTGAGA 60
|||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||
Sbjct 53 CACAAGATCGGAAAATATCTCATGCGGGTTATCCCGATTTCATTACTCTCGCATGTGAGA 112
Query 61 GGACTGATTCGAAGAGGACCCTCTTCGCGATGGTACGTGGTTCCTGCACTTTCCCGGACG 120
||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 113 GGATTGATTCGAAGAGCACCCTCGTCGCGATTGTACGTGGTTCCTGCACTTTCCCGGGCG 172
Query 121 AACATTACAATCTCACACTCAGAGCAAGTGAAAGAAGGTACCTTTGATTATAAAGCA-TT 179
||| | ||||||| |||| ||||||||||||||||||| |||||||| ||||||| ||
Sbjct 173 AACCCGATAATCTCATACTCGGAGCAAGTGAAAGAAGGTAACTTTGATTGTAAAGCATTT 232
Query 180 GG-AGTTAAATGAAATTGGGGTTCTTCGAGTATTGA-ATAGTATGAAGGATGATCCTTAT 237
|| | ||||| ||||||| | |||||||||| || | |||| |||| ||||||||||||
Sbjct 233 GGAATTTAAA-GAAATTGAGCTTCTTCGAGT-TTTAGCTAGTTTGAAAGATGATCCTTAT 290
Query 238 CTTGCTTTATCGTTTCTCAAACGAATTGAAGGAAATGTGGC---TTTGCCTAGTGTCCAA 294
||||||||||||||||| |||||||| ||| |||||||| | ||||||||||||||||
Sbjct 291 CTTGCTTTATCGTTTCTGAAACGAATGGAAAGAAATGTGACTTTTTTGCCTAGTGTCCAA 350
Query 295 GCTTATGCAACTGTTATCAGAATTGTTTGTGGTTGGGGTTTAGATCAGAAACTGGATACT 354
||||||||||||||||||||||| |||| |||||| ||||| ||||||||| || ||| |
Sbjct 351 GCTTATGCAACTGTTATCAGAATCGTTTTTGGTTGTGGTTTGGATCAGAAATTGAATAAT 410
Query 355 TTTCTAGTGGAACTCGTTAGAAAAGGAGATGAGGGACGCGGTTTCAGTGTTATGGATTTG 414
|||||||||||||||||||||||||||||| | |||||||| |||||||| |||||| ||
Sbjct 411 TTTCTAGTGGAACTCGTTAGAAAAGGAGATAAAGGACGCGGATTCAGTGTCATGGATCTG 470
Query 415 TTAAAGGCCATT-G-G-AG-A-AA-TGGA--G--CA--GTCATTGGTGTTGTTGATAC-G 461
||||||||| || | | || | || ||| | | ||||||| ||||||||| | |
Sbjct 471 TTAAAGGCCGTTGGAGAAGCAGAAGAGGAGGGAAAAGGGTCATTGCTGTTGTTGA-GCAG 529
Query 462 GGTCTCCACTGCATTGGTTAAAGCCTATGCTAATCTTGAAATGTTTGAGGAAGCTATCGA 521
| |||||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 530 GCTCTCCAGTGCCTTGGTTAAAGCCTATGCTAATCTTGATATGTTTGACCAAGCTATCGA 589
Query 522 TAttttttttCAAACTTATCATTCCCTAGGACGTGCTCCGGATATA-AAGGCATTGAATG 580
||| ||||| || || || | ||||||| ||| ||| |||||| || ||||||| |
Sbjct 590 TATATTTTTCCAGAC-TA--GTCCCCTAGGGTGTGTTCCAGATATACAA-GCATTGAGTT 645
Query 581 TTTTGATGAACCGTATGATTGCTTCTGG-GAGAACTGATATGG-TGGTTGG-TGTTTTC- 636
|||||||||||||||||||||||||||| || ||| |||||| | | ||| | ||||
Sbjct 646 TTTTGATGAACCGTATGATTGCTTCTGGAGAAAAC-AATATGGCT-G-TGGCTACTTTCA 702
Query 637 TGGGAAATAGAGAGGCTGGGTTTGGATGCGGATGCACATACATATGTGCTGGTGGTTCAA 696
| | |||||||| ||||||| |||||||||||||| |||| |||||||| |||||||||
Sbjct 703 T-GCAAATAGAGCGGCTGGGGCTGGATGCGGATGCAAATACTTATGTGCTTGTGGTTCAA 761
Query 697 GCATTGTGTAGGAATGAGGATA-AAGAAGGGGTAGATAAGCTTCTTATTAGACTGTTAAA 755
|||||||||||||||||||||| || |||| ||||| |||||||||| ||||||||||||
Sbjct 762 GCATTGTGTAGGAATGAGGATACAA-AAGGAGTAGAGAAGCTTCTTAGTAGACTGTTAAA 820
Query 756 CTCAGAGACGAGG-AATCCTTGCGTGTTTTATTTGAATTTCATTGAAGGACTATGTTTAA 814
|||||| | ||| ||| | | ||||||||| ||||||||||||||||||| |||||||
Sbjct 821 TTCAGAGCCTAGGAAAT-GTAGTGTGTTTTATATGAATTTCATTGAAGGACTCTGTTTAA 879
Query 815 ATCAGATGGCAGGCATGGCGT-ATCTTCTACTCCAACCATTGAGGGAAGTGAATATTCTG 873
||||||||||||| || || | ||||| ||||||||||||||||||| | |||||||||
Sbjct 880 ATCAGATGGCAGGTATAGC-TAATCTTGTACTCCAACCATTGAGGGACGCAAATATTCTG 938
Query 874 GTGGATAAGAGTGATCTTGGAATTGCATATCGCAGAGTGGTTCGTGGTTTATGTAATGAG 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GTGGATAAGAGTGATCTTGGAATTGCATATCGCAGAGTGGTTCGTGGTTTATGTAATGAG 998
Query 934 ATGAGAATAGAAGATGCTGAAAAAGCTTTTCTTGACATGGAGGAGCACGGGATTGATCCG 993
|||||||||||||| ||| |||||||| |||||||||||||||| | ||||||||||||
Sbjct 999 ATGAGAATAGAAGAGGCTAAAAAAGCTGTTCTTGACATGGAGGAACTTGGGATTGATCCG 1058
Query 994 GATGTCTATGTTT-ACTCGGCGATAATTGAGGGACATCGCAAGACTATGAATATACCTAA 1052
||||||||| ||| ||||| | |||||||||||| ||||||||| | |||||||| || |
Sbjct 1059 GATGTCTAT-TTTAACTCGTCCATAATTGAGGGATATCGCAAGAATCTGAATATATCT-A 1116
Query 1053 AGCTTTTGATATTTTTAACAAAATGGTGGAGAAAGGAAAAAGAATAAATTGTGTGATTGG 1112
|||||| ||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1117 AGCTTTGGATTTTTTTAACAAAATGGTGAAGAAAAGAAAAAGAATACATTGTGTGATTGT 1176
Query 1113 AAGTTCGATCCTTCAGTGC-TGTTGTCAGATGGGAAATTTCTCAGG-AGCTTATGATCTG 1170
||| || |||||||| ||| | ||||||||||||||||||||| || ||||| |||||||
Sbjct 1177 AAGCTCAATCCTTCAATGCAT-TTGTCAGATGGGAAATTTCTC-GGAAGCTTTTGATCTG 1234
Query 1171 TTTGAAGAGTTTAGAGAGTTGAACATTCCTCTTGATAGGGTTTGCTACAATGTTGCATTT 1230
||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1235 TTTAAAGAGTTTAGAGAGATGAACATTTCTCTTGATAAGGTTTGCTACAATGTTGCATTT 1294
Query 1231 GATGCTTTGGGAAAGCTTGGCAAAGTAGAAGAAGCTATTGAGCTGTTCCGAGAAATGACG 1290
| ||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 1295 GGTGCTTTGGGAAAGCTTGGCAAAGTAGAGGAAGC---T----TGTTCCGAGAAATGACG 1347
Query 1291 GGTAAAGGAATAGCTCCTGACGTCATCAACTACACGACGTTGATAGGTGGTTGCTGTCTA 1350
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1348 GGTAAAGGAATAGCTCCTGATGTCATCAACTACACGACATTGATAGGTGGTTGCTGTCTT 1407
Query 1351 CAAGGTAAATGTTCTGATGCTTTTGATTTGATGATTGAAATGGAC-GGATCAGGTAAAAC 1409
|||||| |||||| |||||| ||| |||||||||||||||||||| ||| ||||||||||
Sbjct 1408 CAAGGTTAATGTTTTGATGCCTTTAATTTGATGATTGAAATGGACGGGA-CAGGTAAAAC 1466
Query 1410 ACCTGATATTGTTATATATAACGTACTTGCTGGTGGATTGGCTAGGAATGGTCTTACCCA 1469
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1467 ACCTGATATTGTTATATATAACGTATTTGCTGGTGGATTGGCTAGGAATGGTCTTGTACA 1526
Query 1470 AGAGGCACTTGAAACTTTGAAACTGATGGAAGATCGGGGGGTAAAACCCACTTATGTTAC 1529
||||||| || | ||||||| |||||||||||||| ||| ||||||||| ||||||
Sbjct 1527 AGAGGCA-TT----CGCTGAAACTAATGGAAGATCGGGGTGTAGAACCCACTTCTGTTAC 1581
Query 1530 ACAAAATATGGTCATTGAAGGCCTGATTGTTGCAGGTAAACTAGACAAGGCTGAAGCTTT 1589
||| || |||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1582 ACACAACATGGTCATTGAAGGCCTGATTGTTGCAGATAAACTAGACGAGGCTGAAGCTTT 1641
Query 1590 CTATGAGAGTTTGGAACATAAGTCTCGGGAAAATGATGCAAGTATGGTTAAAGGCTATTG 1649
|||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1642 TTATGAGAGATTGGAACATAAATCTCGGGAAAATGATGCAAGTATGGTGAAAGGCTATTG 1701
Query 1650 TGAAGCTGGCTGTCTTGATCAGGCATTTGAACGATTCATTAGACTGGAATTTCCTCTGCC 1709
|||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||
Sbjct 1702 TGAAGCTGGCTGTCTTGATCAGGCCTTTGAACGATTCATTAGTCTGGAATGTCCTCTACC 1761
Query 1710 CAAGAGTGTGTATTTTACTCTATTCACTAGTCTTTGCTCTGAGAA-GAATCATATCAGCA 1768
||||||||||||||| || |||||||||||||||||| | ||||| | || |||||||||
Sbjct 1762 CAAGAGTGTGTATTTCACACTATTCACTAGTCTTTGCGCCGAGAATG-ATTATATCAGCA 1820
Query 1769 AAGCTCAAGACTTACTGGATAGAATGTGGGAACTTGGAGTCGAACCTGAGAAGAGCATGT 1828
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 AAGCTCAAGAGTTACTGGAAAGAATGTGGGAACTTGGAGTCGAACCTGAGAAGAGCATGT 1880
Query 1829 ATGGAAAGTTAATTGGTGCATGGTGTCGAGTTAATAATGTGAGAAAAGCCCGGCAGTTTT 1888
|||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 1881 ATGGAAAGCTAATTGGTGCTTGGTGTCGAGTTAATAATGTGAGAGAAGCCCGGCAGAATT 1940
Query 1889 TTGAAA-TTTTAGTTACTA-ATGAGATTATCCCTGATTTGTTCACTTACACAATCATGAT 1946
| || |||||||| ||| | || || ||||||||||||| ||||| ||| |||| |
Sbjct 1941 T--AATGTTTTAGTTGCTAGAGGA-ATGATCCCTGATTTGTACACTTTTACAGTCAT--T 1995
Query 1947 TAACACCTATTGCCGGTTAAACGAGCTGAAGCAAGCCTATGCTCTTTTTC-AAGACATGA 2005
||||| || ||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 1996 -AACACATACTGCCGGTTAAACGAGCTGAAGGAAGCCTATGCTCTTTTTATAAGG-ATGA 2053
Query 2006 AGAGGA-GAGATGTCAAGCCTGATGTGGTAACATACACAGTTTTACTCAATAGCAATCCA 2064
||| | | || |||| |||||||||||||||| ||||||||| ||||||| ||||
Sbjct 2054 AGACAATGGGAA-TCAAACCTGATGTGGTAACATGCACAGTTTTGCTCAATAT---TCCA 2109
Query 2065 GAGTTGGATATGAAGAGGGAAATGGAAG-CCTTTGATGTTAAACCAGACGTTGTCTTA-T 2122
|||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||| | |
Sbjct 2110 AAGTTTGATACGAAGAGGGAAATG-AAGGCCTTTGATGTTAAACCAGACGTTGTCT-ACT 2167
Query 2123 ACAC 2126
||||
Sbjct 2168 ACAC 2171
> AT2G26790.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:11425270-11427669 REVERSE LENGTH=2400
Length=2400
Score = 93.5 bits (50), Expect = 1e-17
Identities = 98/120 (82%), Gaps = 8/120 (7%)
Strand=Plus/Plus
Query 2125 ACAATCATGATTAACAGATATTGCCA-GTTAAACGACGTGA-AGAAAGCCTATG-CTCTT 2181
|||||||||||| ||| || || | | |||| || || | |||||||| | | |||||
Sbjct 1888 ACAATCATGATTCACACCTACTG-TAGGCTAAATGA-GTTACAGAAAGCCGA-GTCTCTT 1944
Query 2182 TTTAAAGACATGAAG-AGGAGAGAAATCGTACCTGATGTGGTAACATACACAGTTTTGCT 2240
||| | ||||||||| | ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1945 TTTGAGGACATGAAGCA-GAGAGGAATCAAACCTGATGTGGTAACATACACAGTTTTGCT 2003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133745070038
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5