BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920270
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13870.1 | Symbols: DRL1, AtKTI12 | calmodulin binding;purin... 1526 0.0
> AT1G13870.1 | Symbols: DRL1, AtKTI12 | calmodulin binding;purine
nucleotide binding | chr1:4747265-4748642 REVERSE LENGTH=1148
Length=1148
Score = 1526 bits (826), Expect = 0.0
Identities = 909/950 (96%), Gaps = 1/950 (0%)
Strand=Plus/Plus
Query 3 CAGTGTGTTTAAAAACCAATGGCACTAGTTGTGATTTGTGGGCAACCTTGTAGTGGTAAG 62
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 50 CAGTGTGTTTAAAAACCAATGGCGCTAGTTGTGATTTGTGGGCAACCTTGTAGTGGTAAG 109
Query 63 TCAATAGCTGCAGTAACTTTAGCTGAAACCTTGAAAGAGTCTGAAACGAAACAGAATGTT 122
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 110 TCAATAGCTGCAGTAACTTTAGCTGAAACATTGAAAGAGTCTGAAACGAAACAGAGTGTT 169
Query 123 AGGATCATCGATGAGGCTTCGTTTCATCTAGACCGCAACCAAAACTATGCTAACATGCCT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 AGGATCATCGATGAGGCTTCGTTTCATCTAGACCGCAACCAAAACTATGCTAACATGCCT 229
Query 183 GCAGAGAAGAATCTGAGAGGAAAGCTCAGGTCAGATGTTGATAGATCAGTTTCGAGAGGC 242
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 230 GCTGAGAAGAATCTGAGAGGAAAGCTTAGGTCAGATGTTGATAGATCAGTTTCGACAGGC 289
Query 243 GATATTGTTATAGTAGATTCCTTGAACAGTATCAAAGGTTACAGATATGAGCTATGGTGT 302
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 290 GAGATTGTTATTGTAGATTCCTTGAATAGTATCAAAGGTTACAGATATGAGCTATGGTGT 349
Query 303 ATCGCACGTGCTGCCGGGATTAGGTATTGTGTTGTTTATTGTGATGTGGATGAAGCTAAT 362
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 350 ATCGCTCGTGCTGCTGGGATTAGGTATTGTGTTGTTTATTGTGATGTAGATGAAGCTCAT 409
Query 363 TGCAGGCAATGGAATAAAGAACGAAGTGATAGAGGTGAGGATGGATATGACAATGGTATA 422
|| |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 410 TGTAGGCAATGGAATAAGGAACGGAGTGATAGAGGTGAAGATGGATATGACGATGGTATA 469
Query 423 TTCGAAGATCTGGTTAGAAGATTCGAGAAACCTGAGAGAAGAAACCGATGGGATTCACCT 482
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 470 TTCGAAGATCTGGTTAGAAGATTTGAGAAACCTGAGAGAAGAAACCGATGGGATTCACCT 529
Query 483 CTCTTTGAGCTATACCCTTCTCGAGAAGTAATAGATAAATCCTCTCCTGTGATTTCAGAG 542
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||
Sbjct 530 CTCTTTGAGCTATACCCTTCTCGTGAAGTTATAGACAAATCCTCTCCTGTGATTTTAGAG 589
Query 543 GCTGTGACTTATCTAACCAAGACTGTTGATTCCAAAACCCAAGATGTGAGAATTCTCCAA 602
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 590 GCTGTGACTTATCTAACCAAGACTGTTGACTCCAAAACCCAAGATGTGAGAATTCTCCAA 649
Query 603 CCAAGTATTGCGACTCAGGCTGCTAGATTTTCAGAAGCGAATTCTCTTTACGAGTTGGAC 662
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 650 CCAAGTATTGCCACTCAGGCTGCTAGATTTTCAGAAGCAAATTCTCTTTACGAGTTGGAC 709
Query 663 AGAGCGACACAAGAAATCGTCAACGCGATTGTGGAACAACAATCACTTGGTGGGGCTATA 722
|||||||||||||||||| |||||||||||||||||||||||||||| || | |||||||
Sbjct 710 AGAGCGACACAAGAAATCATCAACGCGATTGTGGAACAACAATCACTGGGCGCGGCTATA 769
Query 723 AGCAGAGTTACTCTTGGAAATGAACTACCTCCAATCGAAATCAGCAGACCGATTGGACTT 782
||||||||||||||||| |||||||||||||| || |||||| ||||||||||||| ||
Sbjct 770 AGCAGAGTTACTCTTGGCAATGAACTACCTCCGATTGAAATCTGCAGACCGATTGGGCTA 829
Query 783 CCGGAGCTAAGGAGGCTTCGAAGAACGTTTGTTAAATTGATGGGTCAATCGAGTCTAAGT 842
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CCGGAGCTAAGGAGGCTTCGAAGAACGTTTGTTAAATTGATGGGTCAATCGAGTCTAAGC 889
Query 843 GGTCCACCATTACCAACTGATGCAGACAGTGCAAAGAGGCGTTTTGTGGATTACTTGAAC 902
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 890 GGTCCACCGTTACCAACTGATGCAGACAGTGCAAAGAGACGTTTTGTGGATTACTTGAAC 949
Query 903 AGAGAGTTTGGAGGTAATAACGCTTGAAATTTGT-GGGTAAAAAACATCT 951
|||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 950 AGAGAGTTTGGAGGTAATAACGCTTGAAATTTGTTGGGTGAAAAACATCT 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5