BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920273
Length=2015
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13900.1 | Symbols: | Purple acid phosphatases superfamily ... 3145 0.0
> AT1G13900.1 | Symbols: | Purple acid phosphatases superfamily
protein | chr1:4753145-4755580 REVERSE LENGTH=2346
Length=2346
Score = 3145 bits (1703), Expect = 0.0
Identities = 1899/1996 (95%), Gaps = 3/1996 (0%)
Strand=Plus/Plus
Query 1 TTCTTACGTTCCTCCGTCGCCATGATCGCTAAtttctctttcttcttcctcctcctcttc 60
|||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||
Sbjct 6 TTCTTACGTTCCTCCGTCGCCATGATCGTTAATTTCTC--T-TTCTTCCTCCTTCTCTTC 62
Query 61 gtctccgtcttcgttttctctGCTAATGCCAAAGCGACCATTTCTACTTCCCCTAATGTT 120
|||||||||||||||| ||||||| || | |||||||||||||| | ||||||||||| |
Sbjct 63 GTCTCCGTCTTCGTTTCCTCTGCTGATTCTAAAGCGACCATTTCAATTTCCCCTAATGCT 122
Query 121 CTGAATCGATCTGGCGATTCCGTCGTGATACAATGGTCCGGCGTCGATTCTCCGTCCGAT 180
|| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 123 CTCAATCGATCTGGCGATTCCGTTGTGATACAATGGTCCGGTGTCGATTCTCCGTCAGAT 182
Query 181 CTCGATTGGTTAGGACTCTACTCGCCGCCGGAGTCTCCTAATGATCACTTTATTGGTTAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CTCGATTGGTTAGGACTCTACTCGCCGCCGGAGTCTCCTAATGATCACTTTATTGGTTAC 242
Query 241 AAATTCCTAAATGAATCGTCCACTTGGAAATCTGGATTCGGTTCGATTTCTCTTCCTTTG 300
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 243 AAATTCCTCAATGAATCGTCCACTTGGAAAGATGGTTTCGGTTCGATTTCTCTTCCTTTA 302
Query 301 ACAAATCTCCGATCAAATTACACATTCCGGATCTTCCGGTGGACCGAATCCGAGATCGAT 360
|| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||
Sbjct 303 ACCAATCTCCGATCAAATTACACATTCCGGATCTTCCGTTGGAGCGAATCCGAGATTGAT 362
Query 361 CTGAAACATAAGGATCATGATCAGAATCCTTTACCAGGAACTAAACATCTTCTAGCTGAA 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CCGAAACATAAGGATCATGATCAGAATCCTTTACCAGGAACTAAACATCTTCTAGCTGAA 422
Query 421 TCGGAGCAGCTGAGTTTCGGATCCGGTGTTGGCATGCCGGAGCAGATCCATTTGTCGTTC 480
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 423 TCGGAGCAGCTGACTTTCGGATCCGGTGTTGGTATGCCGGAGCAGATCCATTTGTCGTTC 482
Query 481 ACGAATATGGTTAACACGATGCGTGTTATGTTTGTAGCTGGAGATGGAGAAGAACGTTTC 540
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 483 ACAAATATGGTTAACACGATGCGTGTTATGTTTGTAGCTGGAGATGGTGAAGAACGTTTT 542
Query 541 GTGAGATACGGTGAAGCGAAGGATTTGTTAGGCAATTCCGCGGCGGCGCGTGGGATGAGG 600
|| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 543 GTTAGATACGGTGAATCGAAGGATTTGTTAGGTAATTCCGCGGCGGCGCGTGGGATGAGG 602
Query 601 TACGAGAGAGAGCATATGTGTAATTCACCGGCGAATTCTACTATTGGATGGAGAGATCCT 660
|||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||||||||
Sbjct 603 TACGAGAGAGAGCACATGTGTGATTCGCCGGCGAATTCCACTATTGGTTGGAGAGATCCT 662
Query 661 GGTTGGATTTTTGATACCGTTATGAAGAATTTGAATGATGGCGTTAGGTACTATTATCAG 720
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 663 GGTTGGATTTTTGATACCGTCATGAAGAATTTGAATGATGGCGTTAGATACTATTATCAG 722
Query 721 GTTGGGAGTGATTCTAAGGGATGGAGTGAGATCCATAGCTATATTGCTCGAGATGTGACC 780
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 723 GTTGGGAGTGATTCTAAGGGATGGAGTGAGATCCATAGCTACATTGCTCGAGATGTGACT 782
Query 781 GCAGAAGAAACCGTAGCTTTCATGTTTGGAGATATGGGTTGTGCTACACCATACACGACA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GCAGAAGAAACCGTAGCTTTCATGTTTGGAGATATGGGTTGTGCTACACCATACACGACA 842
Query 841 TTTATCCGCACACAAGATGAGAGTATATCTACAGTGAAGTGGATCCTCCGTGACATTGAA 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 843 TTTATCCGCACACAAGATGAGAGCATATCTACAGTGAAGTGGATCCTCCGTGACATTGAA 902
Query 901 GCTCTTGGTGACAAGCCAGCTCTTATTTCACACATTGGAGATATAAGTTATGCTCGTGGT 960
||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 903 GCTCTTGGTGATAAGCCAGCTATGATTTCACACATTGGAGATATAAGTTATGCTCGTGGT 962
Query 961 TACTCGTGGGTATGGGATGAGTTTTTTGTTCAGATCGAGCCTATTGCCTCGAAAGTTCCT 1020
||||||||||||||||||||||| |||| |||| | |||||||||||||||| |||||||
Sbjct 963 TACTCGTGGGTATGGGATGAGTTCTTTGCTCAGGTTGAGCCTATTGCCTCGACAGTTCCT 1022
Query 1021 TACCATGTCTGCATTGGTAATCATGAGTATGATTTCCCTACTCAGCCGTGGAAACCCGAT 1080
|||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 1023 TACCATGTTTGCATTGGTAACCATGAGTATGATTTCTCTACTCAGCCGTGGAAACCTGAT 1082
Query 1081 TGGGCAGCTTCTATTTATGGAAACGATGGTGGTGGCGAATGCGGTGTGCCGTATAGTTTG 1140
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1083 TGGGCAGCTTCTATTTATGGAAACGATGGTGGTGGCGAATGTGGTGTGCCGTATAGCTTG 1142
Query 1141 AAGTTCAACATGCCTGGAAATTCTTCAGAATCCACAGGAATGAAAGCTCCTCCGACAAGG 1200
||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 1143 AAGTTTAACATGCCTGGGAATTCTTCAGAGTCTACAGGAATGAAAGCTCCTCCGACAAGG 1202
Query 1201 AATCTATATTATTCTTATGATATGGGATCGGTCCATTTCATTTATATCTCCACGGAGACG 1260
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct 1203 AATTTATATTATTCTTATGATATGGGAACGGTCCATTTCGTTTATATCTCCACAGAGACG 1262
Query 1261 AATTTCCTTAAAGGAGGCAGTCAATATGAATTCATAAAGCGAGATCTAGAGTCTGTAAAC 1320
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1263 AATTTTCTTAAAGGAGGTAGTCAATATGAATTCATAAAGCGAGATCTAGAGTCTGTAGAC 1322
Query 1321 AGGAAGAAAACACCGTTTGTTGTTGTGCAAGGACACAGACCGATGTACACTACGAGCAAC 1380
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1323 AGGAAGAAAACACCGTTTGTTGTTGTGCAAGGACATAGACCAATGTACACTACGAGCAAC 1382
Query 1381 GAGGTTAGAGACACTATGATTCGACAAAAGATGGTTGAGCATCTAGAACCGCTGTTTGTG 1440
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1383 GAGGTTAGAGACACTATGATTCGACAAAAGATGGTTGAGCATCTAGAACCTTTGTTTGTG 1442
Query 1441 AACAACAATGTCACACTCGCTCTATGGGGACATGTTCATAGATACGAAAGGTTTTGTCCC 1500
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 AAAAACAATGTCACACTTGCTCTATGGGGACATGTTCATAGATACGAAAGGTTTTGTCCC 1502
Query 1501 ATAAGCAACAACACTTGCGGCAAACAGTGGCAAGGAAACCCGGTTCATCTTGTGATTGGT 1560
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 1503 ATAAGCAACAACACTTGCGGCACACAGTGGCAAGGAAATCCGGTTCATCTTGTGATCGGT 1562
Query 1561 ATGGCTGGTCAAGATTGGCAACCGATTTGGCAGCCGAGACCAAACCATCCAGATCTTCCT 1620
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1563 ATGGCTGGTCAAGATTGGCAACCGATTTGGCAGCCTAGACCAAACCATCCAGATCTTCCT 1622
Query 1621 ATATTCCCTCAGCCTGAACAATCAATGTATCGTACGGGTGAATTTGGATACACTCGTTTA 1680
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1623 ATATTCCCTCAGCCTGAACAATCAATGTATCGTACAGGTGAGTTTGGTTACACTCGTTTA 1682
Query 1681 GTTGCAAACAAAGAAAAGCTCACAGTTTCTTTTGTGGGTAACCACGATGGCGAAGTTCAT 1740
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1683 GTTGCAAACAAAGAAAAGCTCACTGTTTCTTTTGTGGGTAATCACGATGGCGAAGTTCAT 1742
Query 1741 GATACTGTTGAGATGTTAGCATCTGGGGAAGTAATCAGTGGGAACAAAGAGAGTACTAAA 1800
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1743 GATACTGTTGAGATGTTAGCATCTGGGGTAGTAATCAGTGGGAGCAAAGAGAGTACTAAA 1802
Query 1801 ATCCCAAATCTTAAAACCGTTCCTGCTTCTGCTACACTTACGGGAAAATCCGAATCTAAT 1860
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1803 ATCCCAAATCTGAAAACCGTTCCTGCTTCTGCTACACTTATGGGAAAATCAGAATCTAAT 1862
Query 1861 GCTTTGTGGTATGTTAAAGGGGCAGGCTTGATGGTTGTAGGTGTGCTTTTAGGGTTCATT 1920
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1863 GCTTTGTGGTATGCCAAAGGAGCAGGCTTGATGGTTGTGGGTGTGCTTTTAGGGTTCATT 1922
Query 1921 ATCGGGTTTGTTACCCGAGGAAAGAAATCTTCGTCTGGTAACCGTTGGATTCCAGTCAAG 1980
||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1923 ATCGGGTTTTTTACCCGGGGAAAGAAATCTTCGTCTGGAAACCGTTGGATCCCAGTCAAG 1982
Query 1981 AACGAGGAGACATAAT 1996
||||||||||||||||
Sbjct 1983 AACGAGGAGACATAAT 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99848884005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5