BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920276

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38740.1 | Symbols:  | Haloacid dehalogenase-like hydrolase ...   627    4e-179


> AT2G38740.1 | Symbols:  | Haloacid dehalogenase-like hydrolase 
(HAD) superfamily protein | chr2:16194327-16196113 REVERSE 
LENGTH=1165
Length=1165

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 373/390 (96%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  127  CTGGAAAACACAATTCTGAAATTGCTCGAGTTCTGTTCCCTGATGATGTTTCAAGAGGGT  186
            ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  324  CTGGAAAACACAATTCTGAAATTGCTCTACTTCTGTTCCCTGATGATGTTTCAAGAGGGT  383

Query  187  TAAAATTCTGTGATGAAAAAGAAGCTCTTTATCGCAAAATTGTTGCAGAAAAGACAAAGC  246
            ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||
Sbjct  384  TAAAATTCTGTGATGAAAAGGAAGCTCTTTACCGCAAAATTGTTGCAGAGAAGATAAAGC  443

Query  247  CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATTGTGGATTGAAACGAGCTG  306
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  444  CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTG  503

Query  307  CGGTTACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTTTGACTG  366
            |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  504  CGGTAACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTCTGACTG  563

Query  367  ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAACATCCCAAACCACACCCTGGAC  426
            ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct  564  ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAATTTCCCAAACCACACCCTGGAC  623

Query  427  CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACACTAGTGTTCGAAC  486
            |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| 
Sbjct  624  CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACGCTAGTTTTCGAAG  683

Query  487  ACTCTATCTCTCGGATTAAAGCTGGAGTTG  516
            |||| |||||| |||| |||||||||||||
Sbjct  684  ACTCGATCTCTGGGATAAAAGCTGGAGTTG  713



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26222224734


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5