BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920285
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14010.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1062 0.0
> AT1G14010.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr1:4800169-4801850 REVERSE LENGTH=915
Length=915
Score = 1062 bits (575), Expect = 0.0
Identities = 645/680 (95%), Gaps = 0/680 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTATACCGGAGCCGCCATGGATCTTCGTCGGAGCTCGATCGTACTATTGATCCTC 60
|||||||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 40 TCTCTCTATATCGGAGCCGTCATGAATCATCGTCGGAGCTCGATCGTACTATTGATCCTC 99
Query 61 TCAATTTTATTTCCAGTGACGCTCTCTATACGATACGAGATATTTTCTGGGCACACGAAA 120
|||||||||| ||| ||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 100 TCAATTTTATCTCCCGTGACACTCTCTATACGATACGAGCTACTTTCTGGGCACACGAAA 159
Query 121 TGCATCTCCGAGGAGATTCACGCAAACGCAATGTCCGTCGGGAAATACAGCATCATAAAC 180
|||||||| |||||||||||||||||||||||| || |||| ||||||||||| ||||||
Sbjct 160 TGCATCTCAGAGGAGATTCACGCAAACGCAATGACCATCGGAAAATACAGCATTATAAAC 219
Query 181 CCTAACGAAGATCATCCTCTTCCTTCTTCCCATAAAGTCACCGTCAGGGTCACATCGCCG 240
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CCTCACGAGGATCATCCTCTTCCTTCTTCCCATAAAGTCACCGTCAGGGTCACATCGCCA 279
Query 241 CAAGGAACGGCTTATCACGAATCGGACGGAGTAGAATCGGGACAATTCTCGTTTACAGCT 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 280 CAAGGGACGGCTTATCACGAATCGGACGGAGTAGAATCGGGACAATTCTCGTTTGTAGCT 339
Query 301 GTGGAAACAGGGGATTACATATCTTGCTTCTCAGCCGTCGATCACAAACCTGAGACGACG 360
||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 340 GTGGAAACAGGGGATTACATAAGTTGCTTCTCCGCCGTCGATCACAAACCAGAGACGACG 399
Query 361 CTGATCATTGACTTTGATTGGAGGACGGGTATTCATACCAAGGATTGGTCGAATGTGGCC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CTGATCATTGACTTTGATTGGAGGACGGGTATTCATACCAAGGATTGGTCGAATGTGGCA 459
Query 421 AAGAAGAGCCAAGTTGAAACGATGGAGTTTGAGGTTAAGAAGTTATTTGAAACCGTGAAT 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 AAGAAGAGCCAAGTCGAAACGATGGAGTTTGAGGTTAAGAAGTTATTTGAAACCGTGAAT 519
Query 481 TCCATCCACGACGAGATGTTCTATCTCCGCGACAGGGAAGAAGAAATGCACAATTTGAAC 540
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 520 GGAATCCACGATGAGATGTTCTATCTCCGCGACAGGGAAGAAGAAATGCACAATCTGAAC 579
Query 541 ATAGCGACAAATTCGAAAATGGCATGGTTGAGTTTCGTGTCGCTTGCAGTTTGTTTATCG 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 ATAGCGACAAATTCGAAGATGGCATGGTTGAGTTTCGTGTCGCTTGCAGTTTGTTTATCG 639
Query 601 GTCGCAGGTCTTCAGTTTTGGCACTTGAAGACTTTCTTCCAGAAGAAGAAGCTCATCTGA 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 640 GTCGCAGGTCTTCAGTTTTGGCACTTGAAGACTTTCTTCCAGAAAAAGAAGCTTATCTGA 699
Query 661 AAACCATTACCATCTCTTGA 680
|||||||||||||||| |||
Sbjct 700 AAACCATTACCATCTCCTGA 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32903366285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5