BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920295
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14090.1 | Symbols: | pseudogene, pentatricopeptide (PPR) r... 850 0.0
AT1G13800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 246 3e-64
> AT1G14090.1 | Symbols: | pseudogene, pentatricopeptide (PPR)
repeat-containing protein, contains Pfam profile PF01535: PPR
repeat; blastp match of 33% identity and 1.5e-16 P-value
to GP|20219038|gb|AAM15782.1|AC104428_3|AC104428 Putative indole-3-acetate
beta-glucosyltransferase {Oryza sativa (japonica
cultivar-group)} | chr1:4824433-4827436 REVERSE LENGTH=3004
Length=3004
Score = 850 bits (460), Expect = 0.0
Identities = 556/602 (92%), Gaps = 7/602 (1%)
Strand=Plus/Plus
Query 368 AGTTGAACCTGGGAAGAGCATGTTTGGGGAA-TTAATTTGCGCTTGGTGTCGAGTTAAAA 426
||| ||||||| ||||||||||| | || || ||||| | ||||||||||||||||| |
Sbjct 1858 AGTCGAACCTGAGAAGAGCATGTAT-GGAAAGCTAATTGGTGCTTGGTGTCGAGTTAATA 1916
Query 427 ATGTGAGAAAAGCCCGGTGGAATTTTAATGTTTTAGTTGCTAGAGGAATAATCCCTGATT 486
|||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1917 ATGTGAGAGAAGCCCGGCAGAA-TTTAATGTTTTAGTTGCTAGAGGAATGATCCCTGATT 1975
Query 487 TGTACACTTTTACAATCATGATTAGCACACATTGCCGGTTAAACGAGCTGAATGAAGCCT 546
|||||||||||||| || |||| |||| | |||||||||||||||||||| |||||||
Sbjct 1976 TGTACACTTTTACAGTC---ATTAACACATACTGCCGGTTAAACGAGCTGAAGGAAGCCT 2032
Query 547 ATGCTCTTTTTATAAGGATGAAGACGATGGGGATCAAACCTGATGTGGTAACATGCATAG 606
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 2033 ATGCTCTTTTTATAAGGATGAAGACAATGGGAATCAAACCTGATGTGGTAACATGCACAG 2092
Query 607 TTTTGCTCAATATTCCAAAGTTAGATACGAAGAGGGAAATGAAGGCCTTTGATGTTAAAC 666
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2093 TTTTGCTCAATATTCCAAAGTTTGATACGAAGAGGGAAATGAAGGCCTTTGATGTTAAAC 2152
Query 667 CAGACGTTGTCTACTATACGGTTTTGATTGCTCAGCAGTGCAAGATTCAGAATCTTCAAG 726
|||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 2153 CAGACGTTGTCTACTACACGTTTTTAATTGCTCAGCAGTGCAAGATTCAGGATCTTCAAG 2212
Query 727 AGGCGGAAAGGATCTTTGCTGAAATGATTGAAAGTGGATTGGAGCCTGATGTTGTGCCGT 786
|||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2213 AGGCAGAAAGAATTTTTGCTGAAATGATTGAAAGTGGATTGGAGCCTGATGTTGTGCCTT 2272
Query 787 ACACAGCACTAATAGCTGGTTGTTGTAGGAATGGATTCGTACATAAGGCGGTCACACTTA 846
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2273 ACACAGCACTAATAGCTAGTTGTTGTAGGAATGGATTCGTACATAAGGCGGTCACACTTA 2332
Query 847 TGCAAGAGATGTGGGAAAAGGGTATTGAGCCAACTAAAGCTTCCCTGTCTGCAGTACACT 906
| ||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||| |
Sbjct 2333 TCCAAGAGATGTGGGGAAAGGGCATTGAGCCAACTACAGCTTCCCTGTCTACAGTACAGT 2392
Query 907 ATGCTATATTAAAGGCCAAGAGACTTCGTTCTAGAAAA-TGATCCGAGAATTTATGAAGA 965
|||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||||
Sbjct 2393 ATGCTATATTAAAGGCCAAGAGACTTCGATCTAAAAAAGTGATCCAAGAATTTATGAAGA 2452
Query 966 GA 967
||
Sbjct 2453 GA 2454
Score = 252 bits (136), Expect = 5e-66
Identities = 167/182 (92%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 3 GGACGCGGTTTCTGTGTCATGGATTTGTTAAAGGCCGTTGGAGTAGCAGAAGAGGAGGGA 62
|||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 444 GGACGCGGATTCAGTGTCATGGATCTGTTAAAGGCCGTTGGAGAAGCAGAAGAGGAGGGA 503
Query 63 AAAGGGTCATTGCTGTTGTTGAGCAGGCTATCTAGTGCCTTGGTTAAAGCCTACGCTAAT 122
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 504 AAAGGGTCATTGCTGTTGTTGAGCAGGCTCTCCAGTGCCTTGGTTAAAGCCTATGCTAAT 563
Query 123 CTTGAAATGTTTGACGAAGCTATCGATATTTTCTTTC-AGACTAGTCCCCTAAGATGTTT 181
||||| ||||||||| ||||||||||||| || |||| |||||||||||||| | ||| |
Sbjct 564 CTTGATATGTTTGACCAAGCTATCGATATATT-TTTCCAGACTAGTCCCCTAGGGTGTGT 622
Query 182 TC 183
||
Sbjct 623 TC 624
Score = 233 bits (126), Expect = 2e-60
Identities = 173/195 (89%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 180 TTTCGTGCAAATAGAGCGGCTGCGGTTGGATGCGGATGC----ACATATGTGCTTGTGGT 235
|||| ||||||||||||||||| || ||||||||||||| || ||||||||||||||
Sbjct 698 TTTCATGCAAATAGAGCGGCTGGGGCTGGATGCGGATGCAAATACTTATGTGCTTGTGGT 757
Query 236 TCAAGCATTGTCTAGGAATGAGGATACAAAAGGAGTAGAGAAGCTTCTTAGTAGACTGTT 295
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TCAAGCATTGTGTAGGAATGAGGATACAAAAGGAGTAGAGAAGCTTCTTAGTAGACTGTT 817
Query 296 AAACTCAGAGACGAGGAA-TCTTTGCGTGTTTTATTTGAATTTCATTGAAGGACTATATC 354
||| |||||| | ||||| | | | ||||||||| ||||||||||||||||||| | |
Sbjct 818 AAATTCAGAGCCTAGGAAATGTA-GTGTGTTTTATATGAATTTCATTGAAGGACTCTGTT 876
Query 355 TAAATCAGATGACAG 369
||||||||||| |||
Sbjct 877 TAAATCAGATGGCAG 891
> AT1G13800.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4731056-4733707 REVERSE LENGTH=2652
Length=2652
Score = 246 bits (133), Expect = 3e-64
Identities = 188/215 (87%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 718 ATCTTCAAGAGGCGGAAAGGATCTTTGCT-GAAATGATTGAAAGTGGATTGGAGCCTGAT 776
||||| ||||||| ||| |||||||| | | ||||||||||||||| | ||||||||
Sbjct 2432 ATCTTAAAGAGGCAAAAATGATCTTTGATCG-AATGATTGAAAGTGGGGTAAAGCCTGAT 2490
Query 777 GTTGTGCCGTACACAGCACTAATAGCTGGTTGTTGTAGGAATGGATTCGTACATAAGGCG 836
|||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct 2491 GTTGTGCCTTACACAGCGTTAATAGCTGGTTGTTGTAGGAATGGATTTGTACTTAAGGCA 2550
Query 837 GTCACACTTATGCAAGAGATGTGGGAAAAGGGTATTGAGCCAACTAAAGCTTCCCTGTCT 896
|||| |||| || ||||||||| ||||||||| ||| |||| ||||||||||| ||||||
Sbjct 2551 GTCAAACTTGTGAAAGAGATGTTGGAAAAGGGGATTAAGCCGACTAAAGCTTCTCTGTCT 2610
Query 897 GCAGTACACTATGCTATATTAAAGGCCAAGAGACT 931
|||||||||||||||| ||||||||||||| ||||
Sbjct 2611 GCAGTACACTATGCTAAATTAAAGGCCAAGGGACT 2645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5