BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920303
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14160.1 | Symbols: | Uncharacterised protein family (UPF04... 1037 0.0
> AT1G14160.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr1:4840697-4841848 REVERSE LENGTH=919
Length=919
Score = 1037 bits (561), Expect = 0.0
Identities = 619/647 (96%), Gaps = 4/647 (1%)
Strand=Plus/Plus
Query 53 GAAGCAAAGCAGATTGAAGCTGAGGAAGCACAACGAATAAAAGC-AGGGGAAGCAAAACA 111
||||||||||| | ||||||||||||||||||| | || |||| | |||||||||||||
Sbjct 195 GAAGCAAAGCATAATGAAGCTGAGGAAGCACAAGGGATTGAAGCTA-GGGAAGCAAAACA 253
Query 112 GATTGAAGCTGGGGAAACTTCAAGATCATCTAGGAAAGTT-ATTACTTTTGAGCCAAAGT 170
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 254 GATTGAAGCTGGGGAAACTTCAAGATCATCTAGGAAA-TTGATTACTTTTGAGCCAAAGT 312
Query 171 TAGTTATAAACAAAGGAATATCGGTTCTTGGATTCGTTCTGCGGTTATTTGCTGTTTTTG 230
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TGGTTATAAACAAAGGAATATCGGTTCTTGGATTCGTTCTGCGGTTATTTGCTGTTTTTG 372
Query 231 GAACTATAGGAAGTGCGCTTGCCATGGGAACAACACATGAATCTGTTGTCTCTTTAAGCC 290
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 373 GAACTATAGGAAGCGCGCTTGCCATGGGAACAACACATGAATCTGTTGTCTCTTTGAGTC 432
Query 291 AGCTCGTACTTCTCAAAGTTAAATACAGCGACTTACCAACGCTCATGTTTTTCGTGGTTG 350
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 AGCTCGTACTTCTGAAAGTTAAATACAGCGACTTACCAACGCTCATGTTTTTCGTGGTTG 492
Query 351 CAAACGCGATTGCTGGTGGATATTTGGTTCTCTCTCTACCGGTGAGTATCTTTCATATCT 410
||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 493 CAAACGCCATTTCTGGTGGATATTTGGTTCTTTCTCTACCTGTGAGTATCTTTCATATCT 552
Query 411 TTAGTACTAAAGCTAAAACCTCGAGAATCATCTTGCTCGTTATCGACACGGTGATGCTGG 470
| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 553 TCAGTACTCAAGCTAAAACCTCGAGAATCATCTTGCTCGTTGTCGACACGGTGATGCTGG 612
Query 471 CTTTGGTGAGCTCTGGTGCATCTGCAGCAACAGCCACCGTGTATCTAGCTCACGAGGGGA 530
||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 613 CTTTGGTTAGCTCTGGAGCATCTGCAGCAACAGCCACCGTGTATTTAGCTCACGAGGGGA 672
Query 531 ACACAACTGCTAATTGGCCACCGATCTGCCAGCAATTTGACGGATTCTGTGAACGCATCT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 ACACAACTGCTAATTGGCCACCGATCTGCCAGCAATTTGACGGATTCTGTGAACGCATCT 732
Query 591 CGGGATCTCTCATCGGTTCTTTCTGCGCAGTGATCTTACTCATGCTTATTGTTATCAATT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CGGGATCTCTCATCGGTTCTTTCTGCGCAGTGATCTTACTCATGCTTATTGTTATCAATT 792
Query 651 CGGCTATCTCCCTCTCGCGGCACTAAGATATCTATGCACATATATAT 697
| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 793 CCGCTATCTCCCTCTCTCGCCACTAAGATATCTATGCACATATATAT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5