BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920306

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14182.1 | Symbols: SCRL28 | Encodes a member of a family of...   335    2e-91


> AT1G14182.1 | Symbols: SCRL28 | Encodes a member of a family 
of small, secreted, cysteine rich proteins with sequence similarity 
to SCR (S locus cysteine-rich protein). | chr1:4849448-4849826 
REVERSE LENGTH=287
Length=287

 Score =  335 bits (181),  Expect = 2e-91
 Identities = 257/293 (88%), Gaps = 8/293 (3%)
 Strand=Plus/Plus

Query  23   ATGAAATCAGCTACTTTGTTTATGGTTTGTTGTCTTCTTATGTTCTTCCTTATGAACAAT  82
            |||||||  ||||||||||||||||||| |||| |||| ||||||||| |||||||||||
Sbjct  1    ATGAAATGGGCTACTTTGTTTATGGTTTCTTGTGTTCTCATGTTCTTCGTTATGAACAAT  60

Query  83   ATTAAAGAGGTGGAAACTGTCCATGTGGAGCAAGCAGGAGTGTGTGAATTCACAGGAGAA  142
            || || |||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   ATCAATGAGGTGGAAAGTATCCATGTGGAGCAAGCAGGAGTATGTGAATTCACAGGAGAA  120

Query  143  TTCCCCGGAAAATGTGGCAATGACGGAAGAAAAACGTGCATAGAAGCAATGAACAAGAAC  202
            ||||| || |||||||||||| ||||||| |||| |||| ||||||| ||||| || || 
Sbjct  121  TTCCCTGGCAAATGTGGCAATAACGGAAG-AAAATGTGCGTAGAAGCGATGAATAA-AA-  177

Query  203  GGCGGCACTCCATTGA-AAAGA-AATAAAAACTTACGTTGTGAATGTTTTGATAACCCTG  260
               |||| ||||  || ||| | || ||||||||||||||||||||||||||||||||||
Sbjct  178  -AAGGCAGTCCA-GGAGAAA-ACAAGAAAAACTTACGTTGTGAATGTTTTGATAACCCTG  234

Query  261  TTGTCATCTTAGGTCGTCCGAAACGCATTTGCAGATGTCGAGATAATTGCTAA  313
            |||||||||| |||||||| |||||||| |||||||||||| | |||||||||
Sbjct  235  TTGTCATCTTGGGTCGTCCCAAACGCATATGCAGATGTCGAAACAATTGCTAA  287



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5