BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920308

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14200.1 | Symbols:  | RING/U-box superfamily protein | chr1...   704    0.0  


> AT1G14200.1 | Symbols:  | RING/U-box superfamily protein | chr1:4854384-4855200 
REVERSE LENGTH=817
Length=817

 Score =  704 bits (381),  Expect = 0.0
 Identities = 528/596 (89%), Gaps = 21/596 (4%)
 Strand=Plus/Plus

Query  7    TGGGTATTTGCGTGATGTCTTCGGAGAATGATTTCGCTGAGTTTTCTTCTTTCTTCGAGA  66
            |||||| | ||||||||||||| ||||||||||||| ||||||||||||| | |||||||
Sbjct  116  TGGGTACTAGCGTGATGTCTTCTGAGAATGATTTCGTTGAGTTTTCTTCTATGTTCGAGA  175

Query  67   GGATGATCCAAGGAGGAGGCGATGGTCTCTCCCGATTTTTGCCGGTGATTGTAGCTTTAG  126
            | || || |||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  176  GAATTATACAAGGAAGAGGTGATGGTCTCTCTCGATTTTTGCCGGTGATTGTAGCTTTAG  235

Query  127  CCGCTAGAGAAGACGATGATGACCAA-GA---ATCGA-C---CAATC-AGAC-----GA-  171
            |||| ||||||||||||||||||||| ||   | ||| |   ||| | ||||     || 
Sbjct  236  CCGCCAGAGAAGACGATGATGACCAAGGATCTACCGATCAAACAA-CGAGACGGGGAGAT  294

Query  172  -C---GAATCCAAGGCTGGTGATGATCAGATCGGGTTCTGGACTCGACGATTTCTTTAGC  227
             |   || ||||||| | ||||||||| ||||| | || |||||||||||||||||||||
Sbjct  295  CCGTTGAGTCCAAGGTTCGTGATGATCGGATCGCGATCGGGACTCGACGATTTCTTTAGC  354

Query  228  GGGGGAGAAAAACAAGGGAGATCGCCGGCGTCGAAATCAGCGGTTGAGAATATGCCACGT  287
            |  || | |||||||||||| |||||||||| ||| ||||  || |||||||||||||||
Sbjct  355  GACGGTGGAAAACAAGGGAGGTCGCCGGCGTTGAAGTCAGAAGTGGAGAATATGCCACGT  414

Query  288  GTCGTGATCGGAGAAGATAAGGAGAAAGGTGGTGGTTCTTGCGCGATTTGCTTGGAGGAG  347
            |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||
Sbjct  415  GTCGTGATCGGAGAAGATAAGGAGAAATATGGTGGTTCTTGCGCGATTTGTTTGGATGAG  474

Query  348  TGGTGTAAAGGTGACGTGGCGGCGGAGATGCCGTGTGAACACAAGTTTCACTCAAAGTGT  407
            |||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct  475  TGGTCTAAAGGTGACGTGGCGGCGGAGATGCCTTGTAAACATAAGTTTCACTCAAAGTGT  534

Query  408  GTGGAGGAATGGTTAGGGATGCACGCCACGTGTCCTATGTGTAGGTATGAGATGCCTGTT  467
            |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  535  GTGGAGGAGTGGTTAGGGAGGCACGCCACGTGTCCTATGTGTAGGTATGAGATGCCTGTT  594

Query  468  GAAGAAGTGGAAGAAGAGAAGAAGGTTGGGATTTGGATTGGTTTCTCCATTAACGCCGGC  527
            |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  595  GAAGAAGTTGAAGAAGAGAAGAAGATTGGGATTTGGATTGGTTTCTCCATTAACGCCGGC  654

Query  528  GAGAGAAGAAACGCAGAAGACGGAGGAAGAAGAAGTTGAA-GTGACTCGAACCCTC  582
            || |||||||||  ||||||||||||||||||||||| || |||||||||||||||
Sbjct  655  GACAGAAGAAACTAAGAAGACGGAGGAAGAAGAAGTTAAAAGTGACTCGAACCCTC  710



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28231590614


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5