BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920317
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14290.1 | Symbols: SBH2 | sphingoid base hydroxylase 2 | ch... 1685 0.0
> AT1G14290.1 | Symbols: SBH2 | sphingoid base hydroxylase 2 |
chr1:4880051-4881964 REVERSE LENGTH=1216
Length=1216
Score = 1685 bits (912), Expect = 0.0
Identities = 1000/1042 (96%), Gaps = 7/1042 (1%)
Strand=Plus/Plus
Query 1 GATTAATTAGACTTAAAGAAATGATGGGTTTCGCGATTTCCGATGAATTTCTGGGGACAT 60
|||| |||||| || ||| |||||| |||||| |||||| |||||||||||||||||||
Sbjct 163 GATTGATTAGAATT--AGAGATGATGAGTTTCGTGATTTCAGATGAATTTCTGGGGACAT 220
Query 61 TCGTGCCGATTCTGGTGTATTGGGTGTATTCAGGGATGTACATTTGCTTAGGATCTTTGG 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TTGTGCCGATTCTGGTGTATTGGGTGTATTCAGGGATGTACATTTGCTTAGGATCTTTGG 280
Query 121 ATAAATATAGATTGCATTCGAAGATAGATGAGGATGAGAAGAATCTCGTTACCAAATCTG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 281 ATAAATATAGATTGCATTCGAAGATAGATGAGGATGAGAAGAATCTCGTTTCTAAATCTG 340
Query 181 CCGTCGTCAAGGGCGTTCTTCTTCAACAGACTCTTCAGGCTATTATCTCCGTTATTCTCT 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CCGTCGTTAAGGGCGTTCTTCTTCAACAGACTCTTCAGGCTATTATCTCCGTTATTCTCT 400
Query 241 TCAAGATAACAGGAAGTGATGCAGATGCTGTTACCACGCAGCAATTTTCCATTCTACTTC 300
|||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 401 TCAAGATAACAGGAAGTGATGCAGATGCTGCTACGACACAGCAATTTTCCATTCTACTTC 460
Query 301 TGGCTAGGCAATTTATCATCGCTATGCTTGTAATTGACACTTGGCAATACTTCATTCATC 360
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 461 TGGCTAGGCAGTTTATCATCGCTATGCTTGTAATTGACACTTGGCAATATTTCATTCATC 520
Query 361 GATATATGCACCTCAACAAGTTCTTGTACAAGCACATCCACTCTCAACATCATCGCCTTG 420
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 521 GATATATGCACCTCAACAAGTTCTTATACAAGCACATCCACTCTCAGCATCATCGCCTTA 580
Query 421 TCGTGCCTTATTCGTATGGAGCTCTATACAACCATCCACTAGAAGGTCTTCTCTTGGACA 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TTGTGCCTTATTCGTATGGAGCTCTATACAACCATCCACTAGAAGGTCTTCTCTTGGACA 640
Query 481 CTATAGGTGGTGCTTTGTCTTTCCTCTTCTCTGGTATGTCCCCAAGAACCGCCATCTTTT 540
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 641 CTATTGGTGGTGCTTTGTCTTTCCTCTTCTCTGGTATGTCCCCAAGAACAGCCATCTTTT 700
Query 541 TCTTCTCCTTCGCTACCATCAAAACAGTAGATGATCATTGTGGACTATGGCTTCCGGGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TCTTCTCCTTCGCTACCATCAAAACAGTAGATGATCATTGTGGACTATGGCTTCCGGGAA 760
Query 601 ATCCATTTCACATCTTCTTCAGTAATAATTCTGCTTACCATGATGTTCACCACCAACTCT 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 761 ATCCATTTCACATCTTCTTCAGTAATAACTCTGCTTACCATGATGTTCACCACCAACTCT 820
Query 661 ATGGAACCAAATACAACTTCTCGCAGCCATTCTTTATTATGTGGGATAGGATCCTCGGTA 720
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 821 ATGGAACCAAATACAACTTCTCGCAGCCATTCTTTGTTATGTGGGATAGGATTCTCGGCA 880
Query 721 CTTACTTGCCTTATTCACTTG-AGAAAAGGGCCAATGGAGGATTTGAAACACGGCCAATC 779
||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 881 CTTACTTGCCTTATTCA-TTGGAGAAAAGAGCCAATGGAGGATTTGAAACACGGCCAATC 939
Query 780 AAAGTATCCAAAGATGAGTAATTTGTCTTTCTTTCTTTTGGGGGCTTCTTGTCACTGCTA 839
|||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||
Sbjct 940 AAAGTATCCAAAGATGAGTAATTTCTCTTTCTTTCTTTTGGGG-CTTCTTGTCAATGCTA 998
Query 840 AGTCATCATTT-GCTCGTTAGAGAACCACTGTAACCTTTGCGTACTTGTAACTGTACATA 898
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 999 AGTCATCATTTTGCTCGTTAGAGAACCACTGTAACCTTTGCGTACTTGTAATTGTACATA 1058
Query 899 CAATTCCAATCTATCCTTTTT-CGATCTGCGGGCAGATGTTTCTGTGTAAGCCAGCAGTA 957
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1059 CAATTCCAATCTATCCTTTTTTCGATCTGCGGGCATATGTTTCTGTGTAAGCCAGCAGTA 1118
Query 958 AATTCATTTTGTAATAGTCAAAACTTCTGATCTTCTCTGTTGTTATTATCTGCTTTATAA 1017
|||| || ||||||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1119 AATTTATCTTGTAATAGCCAAAACTTCAGATCTTCTCTGTTATTATTATCTGCTTTATAA 1178
Query 1018 TTCCAGGTTTTGAGACCTGTGA 1039
||||||||||||||||||||||
Sbjct 1179 TTCCAGGTTTTGAGACCTGTGA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5