BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920318
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14300.2 | Symbols: | ARM repeat superfamily protein | chr1... 1413 0.0
> AT1G14300.2 | Symbols: | ARM repeat superfamily protein | chr1:4882376-4884791
REVERSE LENGTH=1517
Length=1517
Score = 1413 bits (765), Expect = 0.0
Identities = 831/864 (96%), Gaps = 0/864 (0%)
Strand=Plus/Plus
Query 7 AATTATTCCTCGGAGATATGGCGACGGAGCTGGAAGAGCTTGTAGAATTTTTGTCATCTC 66
|||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 89 AATTCTTCCTCGGAGATATGGTGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTC 148
Query 67 CTTCACCGCCTGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGATTAACTGGTTCCGAGG 126
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 149 CTTCACCGCCTGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGG 208
Query 127 AAGGTTTACAATCTCTATCCAAGTATTCCGAGATTCTTCTTCCATCACTGTCTCGGCTTC 186
||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct 209 AAGGTTTACAATCTCTATCAAAGTATTCCGAGATTCTTCTTCCATCATTGTCTCAGCTTC 268
Query 187 TAAATGAAAGCAAGGAGGTATCAGAGCCAGCAGCTCAAGCTCTTGTAAATCTTTCTCAGA 246
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 269 TAAATGAAAGCAAGGAGGTATCAGAGCCAGCAGCTCAAGCTCTTGTTAATCTTTCTCAGA 328
Query 247 ACTCTGAATTGGCTAGGAAGATGATTCAAATGGGTTTGATCAAAGTGGCTATGGACATGT 306
| | ||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 329 AGTGTGAATTGGCAAAGAAGATGATTCAAATGGGTTTGATTAAAGTGGCCATGGACATGT 388
Query 307 TGTATAAGCCAGAGTCTTGTATTACCAGATTGCTTGTTATGCTTCTTGTTAATCTTACTC 366
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 389 TGTATAAGCCAGAGTCTTGTATTACCAGATTACTTGTTATGCTTCTAGTGAATCTTACTC 448
Query 367 AGTTGGATGATGGGGTTTCTTCTTTGCTTCAGATTGATGATGAGAAGATGCATGGACTAC 426
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 449 AGTTGGATGATGGGGTTTCTTCTTTGCTTCAGATTGACGATGAGAAGATGCATGGACTAC 508
Query 427 ATATCATGAAGCTTGTTAGGTCATTTTGCAGGTCTTCTGGTGAAACTACTGATGATCAGT 486
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 509 ATATCATGAAGCTTGTTAGGTCATTTTGCAGGTCTTCTGGTGAAACTGCTGATGATCAGT 568
Query 487 TTGAGCATGTTGGCTCAATCCTTGTCAACATATCAAAAACAGAAGATGGGAGGAAATTAT 546
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 569 TTGAGCATGTTGGTTCGATCCTTGTCAACATATCAAAAACAGAAGATGGGAGGAAATTGT 628
Query 547 TACTGGAGCCAAAGAGAGGACTACTAAAACAGATTATTAGGCAGTTTGATTCAACAAATC 606
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 629 TACTGGAGCCAAAGAGACGACTATTAAAACAGATCATTAGGCAGTTTGATTCAACAAATC 688
Query 607 AATTGCGAAAGAAAGGGGTTGCTGGGACTATTCGTAACTGCTGTTTTGAAGCCAAAAACC 666
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 689 AATTGCGAAAGAAAGGGGTTGCTGGGACTATTCGTAACTGTTGTTTTGAAGCCAAAAACC 748
Query 667 AACTCCAGAATATACTCTTGATATCAGAGTTTCTCTGGCCTGCTCTGCTTCTACCAGTTG 726
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 749 AACTCCAGAATATACTCTTGATATCAGAGTTTCTTTGGCCCGCTCTGCTCCTACCAGTTG 808
Query 727 CAGGCAGCAAGACATACAGTGAGCAAGATATCGCAAAAATGCCACCTGAGCTAGGAAGTG 786
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 809 CAGGCAGCAAGACATACAGTGAGCAAGATGTCGCAAAAATGCCACCTGAGCTTGGAAGTG 868
Query 787 CACTTTCCATTGAGCGAGAACCAGTTACTGATCCTGACATTCGTGTTCAGACACTCGAAG 846
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 869 CACTGTCCATTGAGCGAGAACCAGTTACTGATCCTGACATTCGCGTTCAGACACTCGAAG 928
Query 847 CTATATATTTGATCATCTTAGAGG 870
||||||||||||||||||||||||
Sbjct 929 CTATATATTTGATCATCTTAGAGG 952
Score = 302 bits (163), Expect = 6e-81
Identities = 183/193 (95%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 868 AGGAGGCAGGTCGAAGGGCATTTTGGTCAGTCAACGGGCCAAGGATTCTACAAGTGGGAT 927
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 1064 AGGAGGCAGGTCGAAGGGCATTTTGGTCAGTCAACGGCCCACGGATTCTACAATTGGGAT 1123
Query 928 ACGAATATGAGGAAGATCCAAAAGCAATGAGAGCCTATGAGCAAGTCGGTTCTTTGCTTG 987
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 ACGAATATGAAGAAGATCCGAAAGCAATGAGAGCCTATGAGCAAGTCGGTTCTTTGCTTG 1183
Query 988 TTGAAGAAGCTGGAGGCCCGGAAGAATCGTTGGAGCCGACAAAAGCAGAGTCTTGAAGTA 1047
|||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1184 TTGAGGAAGCTGGAGGTCCGGAAGAGTCGTTGGAGCCAACAAAAGCAGAGTCTTGAAGTT 1243
Query 1048 CATTATTTGTTGT 1060
|||||||||||||
Sbjct 1244 CATTATTTGTTGT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5