BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920320
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein... 1243 0.0
AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated ge... 824 0.0
AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e fam... 789 0.0
> AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein
L16p/L10e family protein | chr1:4888214-4889661 FORWARD LENGTH=972
Length=972
Score = 1243 bits (673), Expect = 0.0
Identities = 711/730 (97%), Gaps = 0/730 (0%)
Strand=Plus/Plus
Query 1 CGTCGAGCAGCCGCGCTTTTTGGCTGAGGAAGGAAAAAGAGAGACGCCATGGGAAGAAGA 60
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 9 CGTCGAGCAGCCGCGCTTTTTGGCCGAGGAAGGATAAAGAGAGACGCCATGGGAAGAAGA 68
Query 61 CCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAAAATCTCGATACTGTCGT 120
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 69 CCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAAAGTCTCGCTACTGTCGT 128
Query 121 GGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGAATGAAGAGGAAAGGTGTTGAT 180
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 129 GGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGTATGAAGAGGAAGGGTGTTGAT 188
Query 181 GAATTCCCATTCTGTGTCCATTTGGTATCATGGGAGAAGGAGAATGTGTCCAGTGAAGCA 240
|| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 189 GAGTTTCCATTCTGTGTCCATTTGGTGTCATGGGAGAAGGAGAATGTGTCAAGTGAAGCA 248
Query 241 CTTGAAGCTGCACGTATTGCTTGCAACAAGTACATGGTGAAATCTGCAGGGAAAGATGCT 300
||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 249 CTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGTGAAGTCTGCTGGAAAAGATGCT 308
Query 301 TTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAACAAGATGCTTTCC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAACAAGATGCTTTCG 368
Query 361 TGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTGGTAAAGCTTTGGGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTGGTAAAGCTTTGGGT 428
Query 421 ACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGTTGCAAGGATGCTCAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 429 ACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGTTGCAAGGATGCCCAT 488
Query 481 GGTCACCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAG 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GGTCACCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAG 548
Query 541 ATTATTGTCAGCAGGAAATGGGGTTTCACGAAGTTTAACAGAGCTGACTTCACCAAGTTG 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 549 ATTATTGTCAGCAGGAAATGGGGCTTCACGAAGTTTAACAGAGCTGACTTCACCAAGTTG 608
Query 601 AGGCAAGAGAAGCGTGTTGTTCCTGATGGTGTCAACGCTAAGTTCCTCTCATGCCATGGA 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 609 AGGCAAGAGAAGCGTGTTGTCCCTGATGGTGTCAACGCTAAGTTCCTCTCATGCCATGGA 668
Query 661 CCTTTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCCAGCCCACTACTGAAGAGTATCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CCTTTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCCAGCCCACTACTGAAGAGTATCA 728
Query 721 GAACTGAAGT 730
||||||||||
Sbjct 729 GAACTGAAGT 738
> AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated
gene 24 | chr1:24839165-24840612 FORWARD LENGTH=882
Length=882
Score = 824 bits (446), Expect = 0.0
Identities = 581/647 (90%), Gaps = 6/647 (1%)
Strand=Plus/Plus
Query 49 ATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAAAATCT 108
|||||| ||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct 44 ATGGGACGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCA 103
Query 109 CGATACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGAATGAAGAGG 168
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 104 CGATACTGTCGTGGTGTGCCAGATCCCAAAATCAGGATCTACGATGTTGGTATGAAGAGG 163
Query 169 AAAGGTGTTGATGAATTCCCATTCTGTGTCCATTTGGTATCATGGGAGAAGGAGAATGTG 228
|||||||||||||| || ||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 164 AAAGGTGTTGATGAGTTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTG 223
Query 229 TCCAGTGAAGCACTTGAAGCTGCACGTATTGCTTGCAACAAGTACATGGTGAAATCTGCA 288
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 224 TCAAGTGAAGCACTTGAAGCAGCACGTATTGCTTGCAACAAGTATATGGTGAAATCTGCT 283
Query 289 GGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAAC 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAAC 343
Query 349 AAGATGCTTTCCTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTGGT 408
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 344 AAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGT 403
Query 409 AAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGTTG 467
|||||| |||| |||||||||| | ||||| |||||||||||||||||||||||| | ||
Sbjct 404 AAAGCTCTTGG-TACTTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTCTGTTAGGTG 462
Query 468 CAAGGATGCTCATGGTCACCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCC 527
|||||| |||||| ||||||||||| ||||||||| | |||||||| ||||||||
Sbjct 463 TAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCC 522
Query 528 TGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGTTTCACGAAGTTTAACAGAGCTGA 587
||||||||||||||| ||||| |||||||||||||| ||||| || || ||| | |||||
Sbjct 523 TGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACTAAATTCAACCGTGCTGA 582
Query 588 CTTCACCAAGTTGAG-GCAAGAGAAGCGTG-TTGTTCCTGATGGTGTCAACGCTAAGTTC 645
| ||| ||| |||| || | |||| | | |||| |||||||||||||| ||||||||
Sbjct 583 GTACACGAAGCTGAGAGCGAT-GAAGAG-GATTGTGCCTGATGGTGTCAATGCTAAGTTT 640
Query 646 CTCTCATGCCATGGACCTTTGGCTAACCGTCAGCCGGGAAGTGCCTT 692
|| ||| |||||| || |||||||||||||| || |||||||||||
Sbjct 641 CTATCAAACCATGGTCCATTGGCTAACCGTCAACCTGGAAGTGCCTT 687
> AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e family
protein | chr1:9321650-9322965 FORWARD LENGTH=877
Length=877
Score = 789 bits (427), Expect = 0.0
Identities = 585/662 (88%), Gaps = 8/662 (1%)
Strand=Plus/Plus
Query 44 ACGCCATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAA 103
|||| |||||| ||||||||||||| ||||||||||| || ||||| ||||||||||| |
Sbjct 55 ACGCGATGGGACGAAGACCTGCGAGATGTTACCGTCAAATTAAGGGAAAGCCATACCCTA 114
Query 104 AATCTCGATACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGAATGA 163
|||| |||||||||||||||| || ||||| || |||||||| ||||||||||| ||||
Sbjct 115 AATCAAGATACTGTCGTGGTGTTCCCGATCCTAAGATCAGGATTTACGATGTTGGTATGA 174
Query 164 AGAGGAAAGGTGTTGATGAATTCCCATT-CTGTGTCCATTTGGTATCATGGGAGAAGGAG 222
|||||||||| |||||||| ||||| || |||||| |||||||| ||||||||||| |||
Sbjct 175 AGAGGAAAGGAGTTGATGAGTTCCC-TTACTGTGTTCATTTGGTTTCATGGGAGAAAGAG 233
Query 223 AATGTGTCCAGTGAAGCACTTGAAGCTGCACGTATTGCTTGCAACAAGTACATGGTGAAA 282
||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 234 AATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAAG 293
Query 283 TCTGCAGGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGG 342
||||| ||||||||||| |||||| | | ||||| |||||||||||||||||||| |||
Sbjct 294 TCTGCCGGGAAAGATGCGTTTCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTAGG 353
Query 343 ATTAACAAGATGCTTTCCTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCT 402
|| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 354 ATCAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTGCT 413
Query 403 TTTGGTAAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGT 461
||||| |||||| || |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 414 TTTGGCAAAGCTCTT-GGTACTTGTGCTAGAGTTGCTATTGGACAGGTTCTTTTGTCTGT 472
Query 462 TCGTTGCAAGGATGCTCATGGTCACCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTCAA 521
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 473 GAGGTGCAAAGATGCTCATGGTCATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTAA 532
Query 522 GTTCCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGTTTCACGAAGTTTAACAG 581
||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| |
Sbjct 533 GTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGGTTCACCAAGTTTAACCG 592
Query 582 AGCTGACTT-CACCAAGTTGAGGCAAGAGAAGCGTG-TTGTTCCTGATGGTGTCAACGCT 639
||||| || ||| ||| | |||||||||||| | | |||| ||||||||||| || ||
Sbjct 593 TGCTGA-TTACACAAAGCTAAGGCAAGAGAAGAG-GATTGTCCCTGATGGTGTAAATGCC 650
Query 640 AAGTTCCTCTCATGCCATGGACCTTTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCCA 699
|||||||| || |||||||| || ||||||||||||||||| |||||||| || ||| ||
Sbjct 651 AAGTTCCTATCTTGCCATGGTCCGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTCA 710
Query 700 GC 701
||
Sbjct 711 GC 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35716478517
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5