BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920325
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14360.1 | Symbols: ATUTR3, UTR3 | UDP-galactose transporter... 1672 0.0
AT2G02810.1 | Symbols: ATUTR1, UTR1 | UDP-galactose transporter... 985 0.0
> AT1G14360.1 | Symbols: ATUTR3, UTR3 | UDP-galactose transporter
3 | chr1:4911093-4913152 REVERSE LENGTH=1388
Length=1388
Score = 1672 bits (905), Expect = 0.0
Identities = 991/1034 (96%), Gaps = 0/1034 (0%)
Strand=Plus/Plus
Query 1 ACAATAAGCGGCGTGCGGCGATGGAAGCTCACGGTTCCGGTTTCCGGCGAGTTCTGTTAT 60
|||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 104 ACAATAAGCGACGTGCGGCGATGGAATCTCACGGTTCCGGTCTCCGGCGAGTTCTGTTAT 163
Query 61 TGTCGTTCTGTGTCGCCGGGATCTGGGCCGCTTACATTTACCAAGGCGTTCTTCAAGAGA 120
|||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct 164 TGTCGTTCTGTGTCGCTGGGATCTGGGCAGCTTACATATACCAAGGCATTCTTCAAGAGA 223
Query 121 CCCTGTCGACAAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATTTCTGA 180
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CCTTGTCGACGAAGAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATTTCTGA 283
Query 181 ATTTGGCTCAGAATGTAATCTGCTTGGTTTGGTCATATATAATGATTAAGCTCTGGTCCA 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 284 ATTTGGCTCAGAATGTAATCTGCTTGGTTTGGTCTTATATAATGATTAAGCTCTGGTCCA 343
Query 241 ATGGAGGTTCTGGTGGAGCCCCATGGTGGACATACTGGAGTGCTGGTATTACTAATACAA 300
| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 344 ACGGAGGTTCTGGTGGAGCCCCATGGTGGACGTATTGGAGTGCTGGCATTACTAATACCA 403
Query 301 TTGGTCCTGCCATGGGCATTGAAGCTTTGAAGTACATTAGTTACCCAGCTCAGGTCCTTG 360
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 404 TTGGTCCTGCTATGGGCATTGAAGCTTTAAAGTATATTAGTTACCCAGCTCAGGTCCTTG 463
Query 361 CAAAATCTTCCAAAATGATTCCAGTTATGCTGATGGGCTCCTTAGTTTATGGCATAAGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CAAAATCTTCCAAAATGATTCCAGTTATGCTGATGGGCTCCTTAGTTTATGGCATAAGAT 523
Query 421 ACACTTTGCCTGAGTATCTTTGCACCTTTCTTGTTGCGGGAGGTGTATCTATGTTTGCCC 480
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 524 ACACTTTGCCTGAGTATCTTTGCACCTTTCTTGTTGCCGGAGGAGTATCTATGTTTGCCC 583
Query 481 TTCTTAAGACAAGCTCTAAAACGATCAGCAAGCTAGCACATCCCAATGCACCCCTTGGAT 540
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 584 TTCTTAAGACAAGCTCTAAAACCATCAGCAAGCTAGCACATCCCAATGCACCCCTTGGTT 643
Query 541 ATGGGCTTTGCTTCTTAAACCTCGCCTTTGATGGATTCACAAATGCCACCCAGGATTCCA 600
| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 644 ACGGGCTTTGCTTCTTAAACCTTGCCTTTGATGGATTCACAAACGCAACCCAGGATTCCA 703
Query 601 TTACCGCAAGGTACCCAAAAACTAATGCATGGGACATAATGCTGGGAATGAATCTGTGGG 660
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 704 TTACCGCAAGGTACCCCAAAACTAACGCATGGGACATAATGCTGGGAATGAATTTATGGG 763
Query 661 GAACCATATACAACATGGTCTACATGTTTGGATTGCCACATGGGAGCGGATTCGAAGCTG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 764 GAACCATATACAACATGGTCTACATGTTTGGATTGCCACATGGGAGCGGATTTGAAGCTG 823
Query 721 TGCAGTTCTGCAAGCAACACCCTGAGGCAGCATGGGACATTCTAATGTACTGTTTATGCG 780
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 824 TGCAGTTCTGCAAGCAACACCCTGAGGCAGCATGGGACATTCTTATGTACTGTTTATGCG 883
Query 781 GTGCAGTGGGCCAAAACTTCATCTTCTTGACAATAAGCAGATTCGGGTCTCTAGCTAACA 840
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GTGCAGTAGGCCAAAACTTCATCTTCTTGACAATAAGCAGATTCGGGTCTCTAGCTAACA 943
Query 841 CGACCATAACCACAACCCGTAAGTTTGTAAGCATCGTGGTGTCTTCAGTTCTGAGCGGGA 900
||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||
Sbjct 944 CGACCATAACCACAACCAGGAAGTTTGTAAGCATCGTGGTATCTTCAGTTTTGAGCGGGA 1003
Query 901 ATCCATTATCGTCCAAACAATGGGGATGTGTGTCGATGGTGTTTGGTGGATTGTCTTACC 960
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1004 ATCCGTTATCTTCCAAACAATGGGGATGTGTGTCGATGGTGTTCGGTGGATTGTCTTACC 1063
Query 961 AAATTTACCTGAAATGGAGGAAGCTGCAGAGAATGCAGAAGAAGAAAAAGGCTTGAAGCT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1064 AAATTTACCTGAAATGGAGGAAGCTGCAGAGAATGCAGAAGAAGAAAAAGGCCTGAAGCT 1123
Query 1021 GAGAATGAGGATCA 1034
|||| || ||||||
Sbjct 1124 GAGATTGGGGATCA 1137
> AT2G02810.1 | Symbols: ATUTR1, UTR1 | UDP-galactose transporter
1 | chr2:801530-803436 FORWARD LENGTH=1259
Length=1259
Score = 985 bits (533), Expect = 0.0
Identities = 849/1002 (85%), Gaps = 20/1002 (2%)
Strand=Plus/Plus
Query 15 GCGGCGATGGAAGCT-CACGGTTCCGGTTTCCGGCGAGTTCTGTTATTGTCGTTCTGTGT 73
|||||||||| || | || || ||||| ||||| ||| ||||||| ||| |||| ||| |
Sbjct 108 GCGGCGATGG-AGGTCCATGGCTCCGGATTCCGTCGAATTCTGTTGTTGGCGTTGTGTAT 166
Query 74 CGCCGGGATCTGGGCCGCTTACATTTACCAAGGCGTTCTTCAAGAGACCCTGTCGACAAA 133
| ||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 167 CTCCGGGATCTGGTCCGCCTACATCTACCAAGGCGTTCTTCAAGAGACTCTGTCCACGAA 226
Query 134 GAAATTTGGTGAAGATGGGAAGAGATTCGAGCATCTTGCATTTC-TGAATTTGGCTCAGA 192
|| ||||||| ||||| |||||| ||||||||||||||| ||| |||| || ||||| |
Sbjct 227 GAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCA-TTCTTGAACTTAGCTCA-A 284
Query 193 A-TGTAATCTGCTTGGTTTGGTCATATATAATGATTAAGCTCTGGTCCAATGGAGGT-TC 250
| |||| |||||||| | ||||| ||||||||||| ||||||||||| |||| ||| |
Sbjct 285 AGTGTAGTCTGCTTGATCTGGTCTTATATAATGATCAAGCTCTGGTCAAATGCTGGTAAC 344
Query 251 TGGTGGAGCCCCATGGTGGACATACTGGAGTGCTGGTATTACTAATACAATTGGTCCTGC 310
|||||||| ||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 345 -GGTGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACAATTGGTCCTGC 403
Query 311 CATGGGCATTGAAGCTTTGAAGTACATTAGTTACCCAGCTCAGGTCCTTG-CAAAATCTT 369
|||||| |||||||| |||||||| || ||||| ||||||||||| ||| ||||||| |
Sbjct 404 CATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGGTT-TTGGCAAAATCGT 462
Query 370 CCAAAATGATTCCAGTTATGCTGATGGGCTCCTTAGTTTATGGCATAAGATACACTTTGC 429
| |||||||||||||||||||| ||||| | |||||||| || |||||||||||||| |
Sbjct 463 CAAAAATGATTCCAGTTATGCTAATGGGAACTTTAGTTTACGGAATAAGATACACTTTCC 522
Query 430 CTGAGTATCTT-TGCACCTTTCTTGTTGCGGGAGGTGTATCTATGTTTGCCCTTCTTAAG 488
|||| || | | |||||||||||||| || ||||| ||||| || ||||| |||||||||
Sbjct 523 CTGAATA-CATGTGCACCTTTCTTGTCGCTGGAGGAGTATCCATCTTTGCTCTTCTTAAG 581
Query 489 ACAAGCTCTAAAACGATCAGCAAGCTAGCACATCCCAATGCACCCCTTGGATATGGGCTT 548
||||||||||| || || ||||||||||||||||| ||||| ||||| || || | |||
Sbjct 582 ACAAGCTCTAAGACAATTAGCAAGCTAGCACATCCAAATGCTCCCCTCGGTTACGCACTT 641
Query 549 TGCTTC-TTAAACCTCGCCTTTGATGGATTCACAAATGCCACCCAGGATTCCATTACCGC 607
|| ||| ||||||||||||||||| ||||||||||||||||| || || |||||| || |
Sbjct 642 TG-TTCCTTAAACCTCGCCTTTGACGGATTCACAAATGCCACACAAGACTCCATTGCCTC 700
Query 608 AAGGTACCCAAAAACT-AATGCATGGGACATAATGCTGGGAATGAATCTG-TGGGGAACC 665
||||||||| ||||| || || ||||||||||||||||||||||| || ||||| ||
Sbjct 701 AAGGTACCCGAAAACCGAA-GCGTGGGACATAATGCTGGGAATGAA-CTTATGGGGCACA 758
Query 666 ATATACAACATGGTCTACATGTTTGGATTGCCACATGGGAGCGGATTCGAAGCTGTGCAG 725
|||||||||||| ||||||||||||| |||||||| |||| |||||| |||| | |||
Sbjct 759 ATATACAACATGATCTACATGTTTGGCTTGCCACAAGGGATAGGATTCAAAGCAATTCAG 818
Query 726 TTCTGCAAGCAACACCCTGAGGCAGCATGGGACATTCTAATGTACTGTTTATGCGGTGCA 785
||||| |||| |||||| || || |||||||||||||||| ||| ||| ||||||||||
Sbjct 819 TTCTGTAAGCTACACCCGGAAGCGGCATGGGACATTCTAAAGTATTGTATATGCGGTGCC 878
Query 786 GTGGGCCAAAACTTCATCTTCTTGACAATAAGCAGA-TTCGGGTCTCTAGCTAACACGAC 844
||||| ||||||||||||||| |||||||||| | | |||||||| ||||||||||||||
Sbjct 879 GTGGGACAAAACTTCATCTTCATGACAATAAGTA-ACTTCGGGTCACTAGCTAACACGAC 937
Query 845 CATAACCACAACCCGTAAGTTTGTAAGCATCGTGGTGTCTTCAGTTCTGAGCGGGAATCC 904
||||||||| ||| | |||||||| ||||| || || || ||||| ||||||| |||||
Sbjct 938 CATAACCACGACCAGGAAGTTTGTTAGCATTGTTGTATCATCAGTAATGAGCGGAAATCC 997
Query 905 ATTATCGTCCAAACAATGGGGATGTGTGTCGATGGTGTTTGGTGGATTGTCTTACCAAAT 964
||| |||| || |||||||||||||| |||||||| |||||||| ||| | || |||||
Sbjct 998 ATTGTCGTTGAAGCAATGGGGATGTGTTTCGATGGTCTTTGGTGGTTTGGCATATCAAAT 1057
Query 965 TTACCTGAAATGGAGGAAGCTGCAGAGAATGCAGAAGAAGAA 1006
||| || ||||||| ||| |||||||| || ||||||||||
Sbjct 1058 TTATCTTAAATGGAAGAAATTGCAGAGAGTGGAGAAGAAGAA 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5