BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920334
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14440.1 | Symbols: AtHB31, HB31, ZHD4 | homeobox protein 31... 1594 0.0
AT2G02540.1 | Symbols: ATHB21, ZFHD4, HB21, ZHD3 | homeobox pro... 302 5e-81
> AT1G14440.1 | Symbols: AtHB31, HB31, ZHD4 | homeobox protein
31 | chr1:4938824-4940903 REVERSE LENGTH=1577
Length=1577
Score = 1594 bits (863), Expect = 0.0
Identities = 946/984 (96%), Gaps = 13/984 (1%)
Strand=Plus/Plus
Query 1 GCAAAAGGTTTTTGAAGAAGACACAATTTTAAAAGATGGAAATTGCAAGTCAAGAAGATC 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 352 GCAAAAGGTTTTTGAAGAAGACCCAATTAAAAAAGATGGAAATTGCAAGTCAAGAAGATC 411
Query 61 ATGATATGCCCATCCCATTAAACACTACA-TT--TGGTGGTGGTAGTCATGGTCACATGA 117
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 412 ATGATATGCCCATCCCATTAAACACTACATTTGGTGGTGGTGGTAGTCATGGTCACATGA 471
Query 118 TACATCATCATCATGATCATCATGCTGCTAATTCTGCTCCTCCAACTCACAACAACAACA 177
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 T-C--CATCATCATGATCATCATGCTGCTAATTCTGCTCCTCCAACTCACAACAACAACA 528
Query 178 TTACTACTCAACCACCACCAATGCCGTTACATGGTAATGGTCATGGAAACAACTATG--- 234
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 529 ATACTACTCAACCACCTCCAATGCCGTTACATGGTAATGGTCATGGCAACAATTATGATC 588
Query 235 ATCATCATCATCAAGATCCTCATCATGTGGGTTACAACGCCATCATCAAGAAGCCTATGA 294
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 589 ATCATCATCATCAAGATCCTCATCATGTTGGTTACAACGCTATCATCAAGAAGCCTATGA 648
Query 295 TAAAGTACAAGGAGTGTCTCAAGAACCATGCAGCAGCTATGGGAGGCAATGCCACTGATG 354
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 649 TAAAGTACAAGGAGTGTCTCAAGAACCATGCAGCAGCTATGGGAGGCAATGCTACTGATG 708
Query 355 GGTGTGGAGAGTTTATGCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGCTCAG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GGTGTGGAGAGTTTATGCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGCTCAG 768
Query 415 CTTGCAATTGCCACAGAAACTTCCATAGAAAAGAAGTGGAAGGCGAAC-CGGCAGCTACC 473
|||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 769 CTTGCAATTGCCACAGGAACTTCCATAGAAAAGAAGTGGAAGGCGAACTC-GCAGCCACC 827
Query 474 GCCATTTCCCCTTACCACCAAC-CGCCTCCACACCGAAAACTCATGCTCAACCACCACAA 532
||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 828 GCCATGTCCCCTTACCACCAACAC-CCTCCACACCGAAAACTCATGCTCAACCACCAAAA 886
Query 533 GATCAGGTCAGCCATGCCACACCAAATGATCATGCCCATTGGAGTCTCTAACTACCGGTA 592
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GATCAGATCAGCTATGCCACACCAAATGATCATGCCCATTGGAGTCTCTAACTACCGGTA 946
Query 593 CATGCATAACAACTCCGAGTCCGAGGACTTTATGGAGGAAGATGGCGTAACCACCGCAGC 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 947 CATGCATAACAACTCCGAGTCCGAGGACTTTATGGAGGAAGATGGCGTAACCACCGCATC 1006
Query 653 TAGATCGCTACCAAACCTGCCATACAACCAGAAGAAGAGGTTTAGGACAAAGTTCACGCC 712
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1007 TAGATCGCTACCAAACCTGCCATACAACCAGAAGAAGAGGTTCAGGACAAAGTTCACGCC 1066
Query 713 GGAACAAAAGGAGAAGATGCTGAGTTTTGCTGAGAAAGTTGGATGGAAAATACAAAGGCA 772
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1067 GGAACAGAAGGAGAAGATGCTTAGTTTTGCTGAGAAAGTTGGGTGGAAAATACAAAGGCA 1126
Query 773 AGAAGATTGTGTTGTTCAAAGGTTTTGCGAGGAGATTGGAGTGAAGAGAAGAGTCCTTAA 832
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1127 AGAAGATTGTGTTGTTCAAAGGTTTTGTGAAGAGATTGGAGTGAAGAGAAGAGTGCTTAA 1186
Query 833 GGTTTGGATGCACAACAACAAGATCCATTTCTCCAAGAAGAACAACATTAACCTCGAAGA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GGTTTGGATGCACAACAACAAGATCCATTTCTCCAAGAAGAACAACATTAACCTCGAAGA 1246
Query 893 CAACGACAACGAAAAGATCAACAATCTGAACAATGTTGATCTGTCCGGTAATAACGACAT 952
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1247 CAACGACAACGAAAAGATCAACAATCTCAACAATGTTGATCTGTCCGGTAATAACGACAT 1306
Query 953 GACTAAGATCGTCCCATGATATAA 976
||||||||||||||||||||||||
Sbjct 1307 GACTAAGATCGTCCCATGATATAA 1330
> AT2G02540.1 | Symbols: ATHB21, ZFHD4, HB21, ZHD3 | homeobox protein
21 | chr2:683647-685309 FORWARD LENGTH=1205
Length=1205
Score = 302 bits (163), Expect = 5e-81
Identities = 482/627 (77%), Gaps = 57/627 (9%)
Strand=Plus/Plus
Query 292 TGATAAAGTACAAGGAGTGTCTCAAGAACCATGCAGC-AGCTATGGGAGGCAATGCCACT 350
|||||||||||||||| || || |||||||||||||| | | |||||||||||||||| |
Sbjct 448 TGATAAAGTACAAGGAATGCCTAAAGAACCATGCAGCTA-CCATGGGAGGCAATGCCATT 506
Query 351 GATGGGTGTGGAGAGTTTATGCCAAGTGGTGAAGATGGCTCCATTGAGGCTCTCACTTGC 410
||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 507 GATGGTTGTGGAGAGTTTATGCCAAGTGGTGAAGAAGGTTCCATTGAAGCTCTCACTTGC 566
Query 411 TCAGCTTGCAATTGCCACAGAAACTTCCATAGAAAAGAAGTGGAAGGCGAACCGGCAGC- 469
|||| |||||| ||||| |||||||| ||||||| |||| ||||| ||| | | |
Sbjct 567 TCAGTTTGCAACTGCCATAGAAACTTTCATAGAAGAGAAACCGAAGGTGAAGAGAAAACA 626
Query 470 TACCG--CCATTT-CC-C--CTTACCACCAACCGCCTCCACACC-GA-AAA-CTCATGCT 520
| | || || || | | |||||||||| ||||| || | || ||| |||||| |
Sbjct 627 TTCTTTTCCCCTTACCTCAACC-ACCACCAACCACCTCCGCAGCAGAGAAAACTCATGTT 685
Query 521 CAACCACCACAAGATCAGGTCAGCCATG-CCACACCAAATGATCATGCCCATTGGAGTCT 579
| ||||| | | ||||| ||| |||| ||||| |||||||| ||||| ||||| || |
Sbjct 686 CCACCACAAGATGATCAAATCA-CCATTACCACAACAAATGATAATGCCTATTGGCGT-T 743
Query 580 CTAACTACCGGTACATGCATAACAACTCCGAGTCCGAGGA-CTTTATGGAGGAAGATGGC 638
| | |||| | || || |||||| ||||| ||||| ||| ||||||||||| |||
Sbjct 744 --A-CAACCG---C-TGGATC-CAACTCAGAGTCAGAGGATCTT-ATGGAGGAAGAAGGC 794
Query 639 GTA--A--C----CA--CCG-CAGCTAG-ATCGCTACCAA-ACC-T---GCCAT--ACA- 678
| | | | || ||| |||| | | | | |||| ||| | | | |||
Sbjct 795 GGAGGAAGCTTGACATTCCGGCAGCCACCACCACCACCATCACCGTATAGTTACGGACAT 854
Query 679 AC-CAGAAGAAGAGGTTTAGGACAAAGTTCACGCCGGAACAAAAGGAGAAGATGCTGAGT 737
| |||||||| ||||||||||||||||| || | || ||||||||||||||| | |||
Sbjct 855 AATCAGAAGAAAAGGTTTAGGACAAAGTTTACACAAGAGCAAAAGGAGAAGATGATTAGT 914
Query 738 TTTGCTGAGAA-AGTTGGATGGAAAATACAAAGGCAAGAAGATTGTGTTGTTCAA-AGGT 795
||||| || || |||||| ||||| || || || ||||| || | |||||||||| || |
Sbjct 915 TTTGCGGA-AAGAGTTGGTTGGAAGATTCAGAGACAAGAGGAATCTGTTGTTCAACAGCT 973
Query 796 TT-TGCGAGGAGATTGGAGTGAAGAGAAGAGTCCTTAAGGTTTGGATGCACAACAACAAG 854
|| | | || |||||||| | | ||||||||| ||||| ||||||||||||||||||||
Sbjct 974 TTGT-CAAG-AGATTGGAATTAGGAGAAGAGTTCTTAAAGTTTGGATGCACAACAACAA- 1030
Query 855 ATCCAT-T-TCTCCAAGAAGAACAACA 879
| | | | |||||||||||| |||||
Sbjct 1031 A-CAAAATCTCTCCAAGAAGAGCAACA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5