BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920336
Length=315
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14455.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 346 8e-95
> AT1G14455.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:4947819-4948400
REVERSE LENGTH=582
Length=582
Score = 346 bits (187), Expect = 8e-95
Identities = 254/284 (89%), Gaps = 14/284 (5%)
Strand=Plus/Plus
Query 17 AAATCATGAAGTCCTCTGCGAAAACAATGAAGATTGCTCTGTTTCTTCTTCTTTTAATAA 76
|||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 118 AAATCATGAAGTTCTCTGCAAAAACAATGAAGATTGCTCTGTTTCTTCTTCTTCTAATAA 177
Query 77 CCGTCCAAACAATTGCCAGACCGTTCACTGACAAAACCGGTAAAATCCCAAGAGTTCCAT 136
|||||||||||||||||||||||||||| ||| |||||| |||||||| || ||||||||
Sbjct 178 CCGTCCAAACAATTGCCAGACCGTTCACCGACGAAACCGATAAAATCCAAACAGTTCCAT 237
Query 137 CTTCTCCTTCAAAAGATCCTCCTCCAGG---TCATGGTCA-T-A-CACCAAGACCAA-GC 189
| ||||||||||| || |||||||||| ||||||||| | | ||||| || || ||
Sbjct 238 ATCCTCCTTCAAAACATACTCCTCCAGGTTATCATGGTCATTCACCACCAGGA-AAAGGC 296
Query 190 CCAACAGTTCCATCTTCTCCTGCAAAAGATCCTCCTCC---AGGTCATGGTCATC--C-A 243
|||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |
Sbjct 297 CCAACAGTTCCATCTTCTCCTGCAAAAGATCCTCCTCCTCCAGGACATGGTCATCATCCA 356
Query 244 CCAAGCCAAGCCGCTAACGACAGGAACACCATGTTTATGCCTGA 287
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct 357 CCAAGCCAAGCCGCTAACGACAAGAACACCATGTTTATGCCTGA 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14627914959
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5