BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920338
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14470.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2403 0.0
AT1G14480.1 | Symbols: | Ankyrin repeat family protein | chr1:... 119 1e-25
> AT1G14470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:4954080-4955702 FORWARD LENGTH=1623
Length=1623
Score = 2403 bits (1301), Expect = 0.0
Identities = 1510/1611 (94%), Gaps = 14/1611 (1%)
Strand=Plus/Plus
Query 21 ATGTCTCGAGAGCTCACTGCATCTCTTGCCGCCATAGCTTCACAAGCTCTAACA-TTCAC 79
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 1 ATGTCTCGAGAGCTCACTGTATCTCTTGCCGCCATAGCTTCACAAGCTCTAACATTTC-C 59
Query 80 TCAGTTAAACCAAATCCATGCTCATCTCATCGTCTCCAATTC-CCTCCATCGACAAAGCT 138
||| |||||||||||||||||||| ||||| || | |||||| | ||| |||||||||||
Sbjct 60 TCAATTAAACCAAATCCATGCTCAGCTCATTGTATTCAATTCTCTTCC-TCGACAAAGCT 118
Query 139 ACTGGGCTTCGCGTTTAATCAGCTGCTGCACGCGCCTCCGTGCGCCGCCTTACTACGCGC 198
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 119 ACTGGGCTTCGCGTATAATCAGCTGCTGCACGCGCCTCCGTGCGCCGTCTTACTACACGC 178
Query 199 GGCTCGTTTTCGATTCAGTGACATTTCCTAATGTCTTCCTCGTCAATTCGATGTTTAGAT 258
||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||| ||
Sbjct 179 GGCTCATTTTCGATTCAGTGACATTCCCTAATGTCTTCGTTGTCAATTCCATGTTTAAAT 238
Query 259 ACTTCTCTCAGATGGATATGGCGAATGACGCTCTTCGTCTCTATGAACAAAGATCGCGTT 318
||||||| ||||||||||||||||||| | ||||||||| |||||||||||||| ||||
Sbjct 239 ACTTCTCGAAGATGGATATGGCGAATGATGTTCTTCGTCTGTATGAACAAAGATCTCGTT 298
Query 319 GCGGGATTATGCCTGACACtttttttttCCCGGTTGTGATCAAATCGGCTGGGAAATTCG 378
| ||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||
Sbjct 299 GTGGGATTATGCCTGACGCTTTTTCTTTCCCTGTTGTGATCAAATCGGCTGGGAGATTCG 358
Query 379 GGGTTTTGTTTCAGGCCCTTGTAGAGAAATTGGGATTTTTTAAGGACCCTTATGTGAGGA 438
|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 359 GGATTTTGTTTCAGGCCCTTGTTGAGAAGTTGGGATTTTTTAAGGACCCTTATGTGAGGA 418
Query 439 ATGTGATAATGGATATGTATGCGAAGCATGAGTCAGTGGAGAGTGCACGTAAAGTGTTCG 498
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 419 ATGTGATAATGGATATGTATGTGAAGCATGAGTCAGTGGAGAGTGCACGCAAAGTGTTCG 478
Query 499 ATCAAATTACTCAGAGAATGGGTTCTGATTGGAATGTGATGATTTCTGGGTATTGGAAAT 558
|||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 ATCAAATTTCTCAGAGAAAGGGTTCTGACTGGAATGTGATGATTTCTGGGTATTGGAAAT 538
Query 559 GTGGG-AACAAGGAGGAAGCTTGTAAATTGTTTGATATGATGCCGGAGGGTAAAATTGAT 617
| ||| |||||||||||||||||||| ||||| ||||||||||| | | | || ||||
Sbjct 539 G-GGGAAACAAGGAGGAAGCTTGTAAGTTGTTCGATATGATGCC--A--G-AGAA-TGAT 591
Query 618 GTGGTTTCTTGGACGGTGATGATTACTGGTTTTGCGAAGCTTAAGGATTTGGAAAATGCA 677
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 592 GTGGTTTCTTGGACGGTGATGATTACTGGTTTTGCAAAGGTTAAGGATTTGGAAAATGCG 651
Query 678 AGGGGGTATTTTGATCGGATGCCGGAGAAGAGCGTTGTTTCTTGGAATGCTATGCTTTCA 737
||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 652 AGGAAGTATTTTGATCGGATGCCGGAGAAGAGTGTTGTTTCTTGGAACGCTATGCTTTCA 711
Query 738 GGTTATTCTCAAAATGGGTTTACAGAGGAAACTCTGAGATTGTTTAATGATATGTTGAGA 797
|||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||
Sbjct 712 GGTTATGCTCAAAATGGTTTTACAGAGGATGCTCTGAGATTGTTTAACGATATGTTGAGA 771
Query 798 CTTGGAGTTAGGCCAAATGAGACCACATGGGTTATTGTTATTTCCGCTTGTTCTTTCCGT 857
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 772 CTTGGAGTTAGGCCAAATGAGACCACATGGGTCATTGTTATTTCCGCATGTTCTTTCCGT 831
Query 858 GCTGATCCTTCCCTCGCTCATTCACTAGTAAAACTGATTGGTGAGAAGAGAATCCGTTTG 917
||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 832 GCTGATCCTTCCCTCACTCGTTCACTAGTAAAACTGATTGATGAGAAGAGAGTCCGTTTG 891
Query 918 AATTTCTTTGTGAAGACGGCATTGCTTGATATGCATGCTAAGTGCAGAGATATTTTATCT 977
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 892 AATTGCTTTGTGAAGACAGCATTGCTTGATATGCATGCTAAGTGCAGAGATATTCAATCT 951
Query 978 GCTAGGAGAATTTTCAACGAGTTAGGTACGCAGAAGAATCTTGTCACTTGGAATGCTATG 1037
||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 952 GCTAGAAGAATTTTCAACGAGTTAGGTACGCAGAGGAATCTTGTGACTTGGAATGCTATG 1011
Query 1038 ATATCTGGATATACTAGAATTGGTGATATGAGTTCGGCTAGGCAGCTTTTTGATACAATG 1097
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1012 ATATCTGGATACACTAGAATCGGGGATATGAGTTCGGCTAGGCAGCTTTTTGATACAATG 1071
Query 1098 CCTAAGCGAAATGTTGTTTCTTGGAATTCGGTGATAGCTGGGTATGCTCACAACGGACAA 1157
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1072 CCTAAGCGAAATGTTGTTTCTTGGAATTCTCTGATAGCTGGGTATGCTCACAACGGGCAA 1131
Query 1158 CCTGCACTAGCCATTGAGTTTTTCGAAGATATGATTGATTATGGAGATTCCAAACCGGAT 1217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GCTGCACTAGCCATTGAGTTTTTCGAAGATATGATTGATTATGGAGATTCCAAACCGGAT 1191
Query 1218 GAAGTAACAATGATTAGTGTTCTCTCGGCTTGTGGACACATGGGTGATCTAGAATTGGGT 1277
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1192 GAAGTAACAATGATTAGTGTTCTCTCGGCTTGTGGACACATGGCTGATCTAGAATTGGGT 1251
Query 1278 GATTGCATTGTAGATTACATTGGTAAGAAGCAAATCAAGCTTAATGATTCAGGATACAGG 1337
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1252 GATTGCATTGTAGATTACATTCGTAAGAACCAAATCAAGCTTAATGATTCAGGATACAGG 1311
Query 1338 TCATTGATCTTCATGTATGCAAGGTGTGGAAACCTGTGGGAAGCAAAACGGGTGTTTGAC 1397
|| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1312 TCTTTGATCTTCATGTATGCTAGGGGTGGAAACCTGTGGGAAGCAAAACGGGTGTTTGAC 1371
Query 1398 GAAATGAAGGAAAGAGATGTTGTCTCTTATAACACGTTATTCTCAGCTTTTGCAGCTAAT 1457
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1372 GAAATGAAGGAAAGAGATGTTGTCTCTTATAACACTTTATTCACAGCTTTTGCAGCTAAC 1431
Query 1458 GGAGATGGGGTTAAAACGCTGAATTTACTCTCAAAGATGAAAGACGAAGGCATTGAGCCA 1517
||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1432 GGAGACGGGGTTGAAACGCTGAATTTACTCTCAAAGATGAAAGACGAAGGTATTGAGCCT 1491
Query 1518 GACCGTGTGACTTACACTAGTGTCTTGACGGCTTGCAACCGTGCAGGATTACTCGAAGAA 1577
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1492 GACCGTGTGACTTACACTAGTGTCTTGACGGCTTGTAACCGTGCAGGATTACTCAAAGAA 1551
Query 1578 GGCCAGAGAATATTCAAATCAATTAGAAATCCG-TCGGCGGATCATTATGC 1627
||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1552 GGCCAGAGAATATTCAAATCAATAAGAAATCCACT-GGCGGATCATTATGC 1601
> AT1G14480.1 | Symbols: | Ankyrin repeat family protein | chr1:4956257-4957971
FORWARD LENGTH=1556
Length=1556
Score = 119 bits (64), Expect = 1e-25
Identities = 130/160 (81%), Gaps = 12/160 (8%)
Strand=Plus/Plus
Query 1787 GTCTGATTT-TTCGAAATCACCAATC-ACTTTCTGGAGATACTGCTCCGCGAT-CATGAG 1843
||||||||| || ||||||||||||| | ||| | || ||||| ||| || | |||||
Sbjct 930 GTCTGATTTGTT-GAAATCACCAATCAATTTTAT-GACATACTATTCCACG-TCCATGAA 986
Query 1844 A-GGGTTAAGGTCTAACATTTCAGATGAAGCTCGTGGAGTC-TTCCTGGTTGTATGCACT 1901
| | | || |||| || ||||||| ||| ||| |||| | || ||| |||||||||||
Sbjct 987 ACGCATGAA-GTCTTCCACTTCAGATCAAGATCGCGGAG-CATTTCTGATTGTATGCACT 1044
Query 1902 TTGATAATAACAGCCACTTATCAGACTG-CCCTCCAGCCT 1940
||||||||||||||||||||||||| || |||||||||||
Sbjct 1045 TTGATAATAACAGCCACTTATCAGA-TGGCCCTCCAGCCT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119929102005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5