BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920348
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14520.1 | Symbols: MIOX1 | myo-inositol oxygenase 1 | chr1:... 1500 0.0
> AT1G14520.1 | Symbols: MIOX1 | myo-inositol oxygenase 1 | chr1:4968142-4970311
REVERSE LENGTH=1427
Length=1427
Score = 1500 bits (812), Expect = 0.0
Identities = 923/977 (94%), Gaps = 6/977 (1%)
Strand=Plus/Plus
Query 4 TGGATCTGAAGTATCTCCATGACGATTCTCATCGATCGCCACTCTGATCAGAACGATGCA 63
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 240 TGGATCTGAAGAATCTCCATGACTATTCTCATAGATCGCCACTCTGATCAGAACGATGCA 299
Query 64 GGAGATGAGATTGTAGAGAAGAATCAGGGGAATGTTAAAGAGGAAGAAACAGAGTTGGTG 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 GGAGATGAGATTGTAGAGAAGAATCAGGGGAATGGTAAAGAGGAAGAAACAGAGTTGGTG 359
Query 124 TTAGATGCAGGTTTTGAGGCTCCTCACACCAACTCCTTCGGTCACACCTTCAGGGATTAT 183
|||||||||||||| |||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 360 TTAGATGCAGGTTTCGAGGCTCCTCACACCAACTCTTTTGGTCGCACCTTCAGGGATTAT 419
Query 184 GATGCTGAGAGTGAGAGGAAG-AGAGGTGTGGAGGAATTTTACAGGGTTAATCACATTGG 242
|||||||||||||| ||| || |||||||| |||||||||||||| || |||||||||||
Sbjct 420 GATGCTGAGAGTGAAAGG-AGAAGAGGTGTTGAGGAATTTTACAGAGTCAATCACATTGG 478
Query 243 CCAAACCGTTGATTTCGTGAGGAAGATGAGGGAAGAATACAG-GAAGCTAAACCGTACTG 301
|||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||| |
Sbjct 479 CCAAACCGTTGATTTCGTGAGGAAGATGAGAGAAGAATAC-GAGAAGCTAAATCGTACGG 537
Query 302 AGATGAGCATTTGGGAATGCTGTGAGCTTCTGAATGAGTTTATCGACGAGAGTGATCCCG 361
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 538 AGATGAGCATTTGGGAATGTTGCGAGCTTCTGAATGAGTTTATCGACGAGAGTGATCCTG 597
Query 362 ATTTGGACGAACCTCAGATCGAACATTTGCTTCAGACAGCTGAAGCCATCAGGAAAGATT 421
|||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct 598 ATTTGGACGAACCTCAGATCGAGCATCTGCTTCAGACAGCTGAAGCCATCAGAAAAGATT 657
Query 422 ACCCTGATGAAGACTGGCTCCATCTAACCGGTCTTATCCACGATCTTGGAAAAGTTCTTC 481
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 ACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGATCTTGGAAAAGTTCTTC 717
Query 482 TTCACCCTTCATTTGGTGAGCTCCCTCAATGGGCTGTTGTTGGCGATACATTTCCAGTGG 541
||||| |||||||||||||||||||||| |||||||| || || ||||||||||||||||
Sbjct 718 TTCACTCTTCATTTGGTGAGCTCCCTCAGTGGGCTGTCGTCGGTGATACATTTCCAGTGG 777
Query 542 GATGTGCATTTGATGAATCTATTGTTCACCACAAGTACTTCAAGGAGAATCCAGACTATG 601
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GATGTGCTTTTGATGAATCTATTGTTCACCACAAGTACTTCAAGGAGAATCCAGACTATG 837
Query 602 ATAACCTTAGTTACAACACCAAGTACGGGATATACACCGAAGACTGTGGGCTCGACAATG 661
|||||| ||||||||| | ||||| ||||||||||| |||| |||||||||||||||||
Sbjct 838 ATAACCCGAGTTACAACTCTAAGTATGGGATATACACTGAAGGCTGTGGGCTCGACAATG 897
Query 662 TGTTAATGTCTTGGGGACATGATGATTACATGTACCTTGTTGCGAAGGAGAATCAAACTA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGTTAATGTCTTGGGGACATGATGATTACATGTACCTTGTTGCGAAGGAGAATCAAACTA 957
Query 722 CATTACCATCTGCCGGTCTTTTCATCATCAGATACCATTCGTTCTACGCTCTTCACAAAT 781
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTTTACCATCAGCCGGTCTTTTCATCATCAGATACCATTCGTTCTACGCTCTTCACAAAT 1017
Query 782 CAGAAGCATATAAGCATTTGATGAACAATGAAGACAGAGAGAACATGAATTGGCTGAAAG 841
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1018 CAGAAGCATACAAGCATTTGATGAACAATGAAGACAGAGAGAACATGAAGTGGCTTAAAG 1077
Query 842 TGTTCAACAAGTATGATCTCTACAGCAAAAGCAAAGTCCGTGTTAACGTGGAGGAAGTGA 901
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1078 TGTTCAACAAGTATGATCTCTACAGCAAAAGCAAAGTCCGCGTAAACGTTGAGGAAGTGA 1137
Query 902 AACCATATTACCTCTCCCTTATCAACAAGTATTTTCCAG-CCAAGCTAAAATGGTGAAAA 960
|||||||||| |||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1138 AACCATATTATCTCTCCCTTACCAACAAGTATTTTCC-GTCCAAGCTAAAATGGTGAAAC 1196
Query 961 ATTACAAGCAGAAAGCT 977
|||||||||||||||
Sbjct 1197 CCTACAAGCAGAAAGCT 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47822907944
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5