BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920350
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14540.1 | Symbols: | Peroxidase superfamily protein | chr1... 1439 0.0
> AT1G14540.1 | Symbols: | Peroxidase superfamily protein | chr1:4974067-4975705
REVERSE LENGTH=1219
Length=1219
Score = 1439 bits (779), Expect = 0.0
Identities = 915/981 (93%), Gaps = 8/981 (1%)
Strand=Plus/Plus
Query 4 TCTTGTTATAACACTAAATGGCGATCTTCAAGATTCTTGTATTGTTGTTGAGTTTGTCTT 63
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 90 TCTTGTAATAA-GCTAAATGGCGATCTTCAAGATTCTTGTATTGTTGTTGAGTTTGTGTT 148
Query 64 GTTTCTGTCAAGCACAACTTTCTCCTTCTTTCTACGACCAAACTTGTCCAAATGCTCTCT 123
||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||
Sbjct 149 GTTTCAGTCAAGCACAACTTTCTCCTACTTTCTACGACCAAACTTGTCAAAACGCTCTCT 208
Query 124 CGACCATCCGGTCTTCAATCCGAACCGCAATCAGCCGTGAACGTAGAATGGCTGCTTCTC 183
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CCACCATCCGATCTTCAATCCGAACCGCAATCAGCCGTGAACGTAGAATGGCTGCTTCTC 268
Query 184 TCATCCGTCTCCATTTCCACGACTGCTTCGTTAATGGTTGTGATGCATCGGTCATGCTCG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TCATCCGTCTCCATTTCCACGACTGCTTCGTTAATGGTTGTGATGCATCGGTCATGCTCG 328
Query 244 TGGCAACTCCCACCATGGAGAGTGAGAGAGACTCATTGGCAAATTTTCAATCGGCAAGAG 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 329 TGGCAACTCCCACCATGGAGAGTGAGAGAGATTCATTGGCAAATTTTCAATCGGCAAGAG 388
Query 304 GATTCGAAGTTATCGATCAAGCCAAATCCGCTGTGGAGAGTGTGTGTCCAGGCGTAGTTT 363
|||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||
Sbjct 389 GATTTGAAGTTATCGATCAAGCCAAATCAGCTGTAGAGAGTGTTTGTCCCGGCGTTGTTT 448
Query 364 CTTGCGCTGATATTATTGCCGTTGCTGCCAGAGACGCTTCTGAATATGTCGGAGGTCCAA 423
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 449 CTTGCGCTGATATTATTGCCGTTGCTGCTAGAGATGCTTCTGAATATGTCGGAGGTCCAA 508
Query 424 GATATAATGTGAAGGTTGGTCGAAGAGATTCCACTAATGCGTTTAGGGCAATTGCAGACA 483
||||| |||||||||||||||||||||||||||| || ||||||||||| || |||||||
Sbjct 509 GATATGATGTGAAGGTTGGTCGAAGAGATTCCACCAACGCGTTTAGGGCTATCGCAGACA 568
Query 484 GCGGCGATCTCCCCAATTTTAGGGCAAGCCTCAACGATCTCTCTGAACTCTTCCTTAAAA 543
| || |||||||||| || ||||| |||||||||||||||||||||||||||||| ||
Sbjct 569 G-GG--ATCTCCCCAACTTCAGGGCTAGCCTCAACGATCTCTCTGAACTCTTCCTTCGAA 625
Query 544 AAGGACTCAACACTAGAGACCTCGTCGCTCTCTCAGGAGCTCACACCTTAGGGCAATCTC 603
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 626 AAGGACTCAACACAAGAGACCTCGTCGCTCTCTCAGGAGCTCACACATTAGGGCAAGCTC 685
Query 604 AATGCCTCACATTCAAGGGTAGACTTTACGACAACTCGAGTGACATTGACGCAGGATTCT 663
|||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 686 AATGCCTCACGTTCAAAGGTAGGCTTTACGATAACTCGAGTGACATTGACGCGGGATTCT 745
Query 664 CCAGCACACGTAAGCGTCGCTGCCCGGTCAACGGTGGAGATACGACTCTAGCACCTCTCG 723
|||| || ||||||||||| || ||||||||||||||||||||||||||||||||| | |
Sbjct 746 CCAGTACCCGTAAGCGTCGTTGTCCGGTCAACGGTGGAGATACGACTCTAGCACCTTTAG 805
Query 724 ATCAAGTGACACCAAATTCGTTCGACAATAACTATTACAGAAACTTGATGCAGAAGAAAG 783
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 ATCAAGTGACACCAAACTCGTTCGACAATAACTATTACAGAAACTTGATGCAGAAGAAAG 865
Query 784 GACTTTTGGAGA-CTGATCAAGTTTTGTTCGGAACCGGAGCTTCTACGGACAGTATTGTG 842
||||||| || | | |||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 866 GACTTTTAGAAAGC-GATCAAGTTTTGTTCGGAACCGGAGCTTCTACAGATAGTATAGTG 924
Query 843 ACAGAGTACAGCAGAAATCCATCACGATTCGCGTCTGATTTCGGAGCTGCAATGATCAAA 902
|| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 925 ACGGAGTACAGCAGAAATCCATCACGATTTGCGTCTGATTTCTCAGCTGCAATGATCAAA 984
Query 903 ATGGGAGATATTCAGACACTCACCGGCTCAGATGGACAAATCCGGAGGATATGCAGTGCC 962
||||||||||||||||||||||| || ||||||||||||||||| || || |||||||||
Sbjct 985 ATGGGAGATATTCAGACACTCACTGGTTCAGATGGACAAATCCGAAGAATCTGCAGTGCC 1044
Query 963 GTTAACTAA--GAGTTATTAC 981
||||| ||| ||||||||||
Sbjct 1045 GTTAATTAAAAGAGTTATTAC 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5