BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920352
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14560.1 | Symbols: | Mitochondrial substrate carrier famil... 1764 0.0
> AT1G14560.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr1:4980672-4983284 FORWARD LENGTH=1826
Length=1826
Score = 1764 bits (955), Expect = 0.0
Identities = 1009/1036 (97%), Gaps = 0/1036 (0%)
Strand=Plus/Plus
Query 1 TTTGACTTAGTTGAATTGAGATGGGTTCGTCACAAGGCTCTACACTCTCGGCTGATGTGA 60
||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 609 TTTAACTTAGTTGAACTGAGATGGGTTCGTCACAAGGCTCCACACTCTCGGCTGATGTGA 668
Query 61 TGAGCCTTGTGGATACATTGCCTGTGCTTGCAAAAACCCTTATCGCTGGAGGAGCTGCTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TGAGCCTTGTGGATACATTGCCTGTGCTTGCAAAAACCCTTATCGCTGGAGGAGCTGCTG 728
Query 121 GTGCAATTGCTAAGACTGCTGTTGCACCTTTGGAAAGGATCAAAATTCTGTTGCAGACTA 180
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 729 GGGCAATTGCTAAGACTGCTGTTGCACCTTTGGAAAGGATCAAAATTCTATTGCAGACTA 788
Query 181 GAACAAACGACTTTAGGACCCTTGGTGTGTCCCAGTCACTAAAGAAGGTTTTACAATTTG 240
||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 789 GAACAAACGACTTTAAGACCCTTGGTGTGTCCCAGTCATTAAAGAAGGTGTTACAATTTG 848
Query 241 ATGGTCCTCTTGGATTCTATAAAGGAAACGGGGCGAGTGTTATTCGGATTATTCCATATG 300
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 849 ATGGTCCTCTCGGATTCTATAAAGGAAATGGGGCGAGTGTTATTCGGATTATTCCATATG 908
Query 301 CCGCCCTTCATTACATGACGTATGAAGTTTATCGTGACTGGATTTTGGaaaaaaaTCTTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CCGCCCTTCATTACATGACGTATGAAGTTTATCGTGACTGGATTTTGGAAAAAAATCTTC 968
Query 361 CCTTAGGTTCTGGTCCAATTGTTGATCTTGTGGCTGGTTCAGCTGCAGGCGGAACAGCAG 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 969 CCTTAGGTTCTGGTCCAATTGTTGATCTTGTGGCTGGTTCAGCTGCAGGTGGAACAGCAG 1028
Query 421 TTTTGTGTACATATCCCCTTGATTTAGCTCGTACTAAGCTAGCTTACCAGGTTTCTGACA 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TTTTGTGCACATATCCCCTTGATTTAGCTCGTACTAAGCTAGCTTACCAGGTTTCTGACA 1088
Query 481 CAAGACAGAGTCTCCGAGGTGGTGCGAATGGATTTTACCGTCAACCTACTTATTCAGGCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 CAAGACAGAGTCTCCGAGGTGGTGCGAATGGATTTTACCGTCAACCTACTTATTCAGGCA 1148
Query 541 TAAAAGAGGTGCTTACAATGGCCTATAAAGAAGGGGGACCACGCGGGCTATATCGTGGTA 600
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1149 TAAAAGAGGTGCTTGCAATGGCTTATAAAGAAGGGGGACCACGCGGGCTATATCGTGGCA 1208
Query 601 TAGGGCCAACGCTGATCGGCATCCTTCCTTACGCGGGCCTTAAGTTCTACATATATGAGG 660
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1209 TAGGGCCAACGCTGATCGGGATCCTTCCTTACGCGGGGCTTAAGTTCTACATATATGAGG 1268
Query 661 AATTGAAAAGACATGTTCCTGAAGAGCATCAAAACTCTGTTCGAATGCATCTACCTTGTG 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1269 AATTGAAAAGGCATGTTCCTGAAGAGCATCAAAACTCTGTTCGAATGCATCTACCATGTG 1328
Query 721 GAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGATGTTGTTAGGAGAC 780
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1329 GAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGACGTTGTTAGGAGAC 1388
Query 781 AAATGCAGGTAGAGAATCTGCAGCCTATGACGAGCGAAGGCAACAACAAGCGTTACAAGA 840
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1389 AAATGCAGGTAGAGAATCTGCAACCTATGACGAGTGAAGGCAACAACAAGCGTTACAAGA 1448
Query 841 ACACATTTGATGGGCTTAACACGATTGTTCGAACTCAGGGTTGGAGACAGTTGTTTGCTG 900
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1449 ACACATTTGATGGGCTTAACACGATTGTTCGAACTCAGGGTTGGAAACAGTTGTTTGCTG 1508
Query 901 GTTTAAGCATCAACTACATCAAGATTGTTCCATCGGTTGCGATTGGATTCACAGTCTATG 960
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GTTTAAGCATCAACTACATTAAGATTGTTCCATCGGTTGCGATTGGATTCACAGTCTATG 1568
Query 961 AGTCGATGAAGTCATGGATGCGAATTCCACCGCGAGAGAGATCAAAGCCAGCATGAGGAT 1020
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1569 AGTCGATGAAGTCATGGATGCGAATTCCACCGCGCGAGAGATCAAAGCCAGCATGAGGGT 1628
Query 1021 CTTTGTTCATTCACTC 1036
|||||||| |||||||
Sbjct 1629 CTTTGTTCCTTCACTC 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5