BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920353
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14570.2 | Symbols: | UBX domain-containing protein | chr1:... 2266 0.0
> AT1G14570.2 | Symbols: | UBX domain-containing protein | chr1:4983567-4987375
FORWARD LENGTH=1793
Length=1793
Score = 2266 bits (1227), Expect = 0.0
Identities = 1386/1460 (95%), Gaps = 21/1460 (1%)
Strand=Plus/Plus
Query 2 TAGGGTTTGTGGTCTTAACAATGGAGGGAATGTTGTCTTCGGGTGACCAACAGAGATTAG 61
||||| ||||||||||| ||||||| ||||||||||| || |||||||||||||||||||
Sbjct 185 TAGGG-TTGTGGTCTTAGCAATGGAAGGAATGTTGTCGTCCGGTGACCAACAGAGATTAG 243
Query 62 TCTCTTCTTTCCTTGAAATCGCCGTCGGACAGACCGCTGAAACTGCTCGACAGTTCTTAC 121
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 244 TCTCTTCTTTCCTTGAAATCGCCGTCGGACAGACCGCCGAAACTGCTCGACAGTTCTTAC 303
Query 122 AGGCGACAAGCTGGAAACTTGAGGAAGCTATTCAGCTTTTTTACATTGGAAACGAAGGTG 181
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 304 AGGCGACAAGCTGGAAACTTGAGGAAGCTATTCAGCTCTTTTACATTGGAAATGAAGGTG 363
Query 182 GTATGCTTCCA-TCTGGTACACACACTCAGCCAGCGTCTAACGA-GCACGTGGCTGCACA 239
|||||||| || |||||||||||||||||||||||||| ||||| | | | |||||||||
Sbjct 364 GTATGCTT-CAGTCTGGTACACACACTCAGCCAGCGTCCAACGATG-ATGCGGCTGCACA 421
Query 240 ATCTTGGGGGGCGGCTACAGGCACAGGAAACGAAAGGATAATGCAGAACGATGTAGATGA 299
|||||||||||||||||||||||||| || |||| |||| ||| |||||||| |||||
Sbjct 422 GTCTTGGGGGGCGGCTACAGGCACAGGTAATGAAATGATACTGCCCAACGATGTCGATGA 481
Query 300 AGTCCGTGCTCCTTTACCTGTTGTGAGGGAGACTCTTTATGGTGAATCAGTGTATTATGG 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 482 AGTCCGTGCTCCTTTACCTGTTGTGAGGGAGACTCTTTATGGTGAATCAATGTATTATGG 541
Query 360 GACTATGAGGGTGGGAAACTCTCAGCCTGAACCAAATTCTTTGATTGCTTTCCGTAACTT 419
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GGCTATGAGGGTGGGTAACTCTCAGCCTGAACCAAATTCTTTGATTGCTTTCCGTAACTT 601
Query 420 CAGTGAAGAGCCAAAAAGCCCTGGAATTTGGGAACCAGATGAGGGTGATTcctctgcctc 479
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 602 CAGTGAAGAGCCAAAAAGCCCTGGAATTTGGGAACCAGATGAGGGTGA----T-T-CCTC 655
Query 480 agcctcagcctcagcctctgcctctgcctcCGCATCAGAGTCAGCATCTGCTCCTCGGGA 539
|||||| ||||||| | | | | || || ||||||||||||||||| || ||||||||
Sbjct 656 AGCCTCTGCCTCAG-C-AT--C-C-GCATCTGCATCAGAGTCAGCATCCGCACCTCGGGA 709
Query 540 CAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCATCTGATGTTCCATGGCTCTTTTGAACA 599
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 710 CAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCACCTGATGTTCCAGGGCTCTTTTGAACA 769
Query 600 GGCAAAAGCTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCAC 659
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GGCAAAAACTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCAC 829
Query 660 AGAATTCAGCTCTCATATGCTAAATCGAGATACTTGGGCGAATGATGCTGTTTCTCAGAC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GGAATTCAGCTCTCATATGCTAAATCGAGATACTTGGGCGAATGATGCTGTTTCTCAGAC 889
Query 720 TATCAAAGCCAACTTCATCTTCTGGCAGGTCTATGATGATACCACGGAAGGAAGAAAGGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TATCAAAGCCAACTTCATCTTCTGGCAGGTCTATGATGATACCACGGAAGGAAGAAAGGT 949
Query 780 TTGCACATACTACAAGCTTGAATCTATTCCTGTGGTGCTTGTAATTGATCCAACCACTGG 839
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 950 TTGCACATACTACAAGCTCGAATCTATTCCCGTGGTGCTTGTAATTGATCCAACCACTGG 1009
Query 840 TCAAAGGATGAGAATCTGGAGCGGAATGGTTGAACCC-GAGAATCTGCTGGAGGATTTAG 898
|||||| |||||||| |||| |||||||||||| ||| |||||| |||| ||||||||||
Sbjct 1010 TCAAAGAATGAGAATGTGGACCGGAATGGTTGA-CCCTGAGAATTTGCTAGAGGATTTAG 1068
Query 899 TGCCGTTCATGGATGGTGGTCCTCGTGAACACTTTGCTTCTCTCTCAAAGAAGCGGCCAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TGCCGTTCATGGATGGTGGTCCTCGTGAACACTTTGCTTCTCTCTCAAAGAAGCGGCCAA 1128
Query 959 GAGGAAGCTTCTCATTGGCTCCTCATTCCAATCCCAAAGAGGATGTTGCAAAAGATGAAG 1018
|||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1129 GAGGCAGCTTCTCATTGACTCCTCATTCCAAACCCAAAGAGGATGTTGCAAAAGATGAAG 1188
Query 1019 AAGAAGAAGAACTGCAACGAGCATTAGCTGCTTCCTTGGAAGATAACAGCATGAAAGAGT 1078
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1189 AAGAAGAGGAACTGCAACGAGCATTAGCTGCTTCCTTGGAAGATAACAACATGAAAGAGT 1248
Query 1079 CTTCAGATGATCAATCAACAATGACGCCTGAAGAAGTAGCGGTTGAAGCAGTTACATCCG 1138
|||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 1249 CTTCAGATGATCAATCAACAATAATACCTGAAGAAGTAGCAGTTGAAGCAGTTACATCCG 1308
Query 1139 CGGTGCTGCCAACATTCCCACCACTGCCAGAAGAACCAAAGGGAGGCGATCGCAGCCTAC 1198
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1309 CGGTCCTGCCAACATTCCCACCACTGCCGGAAGAACCAAAGGGAGGCGATCGCAGCCTAC 1368
Query 1199 AATGCAGAGTTGGGATCCGTTTACCCAACGGACAAAGACTCCAGAGAAATTTCCTCAAAA 1258
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1369 AATGCAGAGTTGGGATCCGTTTACCTAACGGACAAAGACTCCAGAGGAATTTCCTCAAAA 1428
Query 1259 CAGACACAATTCAGCTTCTCTGGTCATTCTGCTATTCTCAGCTTGAGGAATCAGAGAGGA 1318
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1429 CAGACACAATTCAGCTTCTCTGGTCATTCTGCTATTCCCAGCTTGAGGAATCAGAGAGGA 1488
Query 1319 AGAAGCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAGACATTGGAGTATGAAT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 AGAAGCCATTGAAGCTAACACAAGCGATTCCAGGTGAATCAAAGACATTGGAGTATGAAT 1548
Query 1379 CTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTCCATGATCTCTGCTACATGGGAAT 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1549 CTAACTTAACCTTGGAGCAGTCTGGTGTTGCCAATTCCATGATCTCTGCTACGTGGGAAT 1608
Query 1439 GAAATATCAT--TATCTATA 1456
|||||||||| ||||||||
Sbjct 1609 GAAATATCATCATATCTATA 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5