BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920358
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14620.1 | Symbols: DECOY | decoy | chr1:5014753-5016604 REV... 1214 0.0
> AT1G14620.1 | Symbols: DECOY | decoy | chr1:5014753-5016604 REVERSE
LENGTH=1000
Length=1000
Score = 1214 bits (657), Expect = 0.0
Identities = 707/732 (97%), Gaps = 0/732 (0%)
Strand=Plus/Plus
Query 13 GATCGAGAAATGCAGAGATCATCTTTGCGGCTCCTAGCTAAGCCTCTCTTGGAGAGCAGG 72
||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 95 GATTGAGAAATGCCGAGATCATCTTTGCGGCTACTAGCTAAGCCTCTCTTGGAGAGCAGG 154
Query 73 CGAGGGTTTTGCACGAGCTCAGATAAGATCGTAGCTTCGGTGCTTTTCGAGAGACTACGC 132
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 155 CGAGGGTTTTGCACGAGCTCTGATAAGATCGTAGCTTCGGTGCTTTTCGAGAGATTGCGC 214
Query 133 GTTGTGATACCCAAACCGGATCCTGCTGTTTACGCTTTCCAGGAGTTCAAATTCAATTGG 192
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 215 GTTGTGATACCCAAACCGGATCCTGCCGTTTACGCTTTCCAGGAGTTCAAATTCAATTGG 274
Query 193 CAACAGCAGTTTCGTCGTAGATATCCAGATGAGTTCTTGGACATTGCTAAGAACAGAGCC 252
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 275 CAACAGCAGTTTCGTCGTAGATATCCCGATGAGTTCTTAGACATTGCTAAGAACAGAGCC 334
Query 253 AAGGGTGAATATCAAATGGACTATGTACCTGCTCCTAGAATTACAGAGGCTGACAAGAAT 312
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 AAGGGTGAATACCAAATGGACTATGTACCTGCTCCTAGAATTACAGAGGCTGACAAGAAT 394
Query 313 AACGATAGGAAGTCATTATATAGAGCTCTAGACAAAAAGTTGTATCTTCTCATCTTCGGC 372
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 395 AACGATAGGAAGTCATTATATAGAGCCCTAGACAAAAAGTTGTATCTTCTCATATTCGGC 454
Query 373 AAGCCATTTGGAGCTACTAGTGACAAACCTGTCTGGCATTTCCCAGAGAAAGTTTACGAT 432
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 455 AAGCCATTTGGAGCTACTAGTGACAAACCTGTTTGGCACTTCCCAGAGAAAGTCTATGAT 514
Query 433 TCTGAGCCAACTCTTCGCAAGTGCGCGGAATCTGCTTTGAAGTCAGTCTTAGGAGACCTC 492
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 515 TCTGAGCCAACTCTTCGCAAGTGCGCGGAATCTGCTTTGAAGTCAGTCGTAGGAGACCTC 574
Query 493 ACTCACACATACTTTGTTGGAAATGCTCCAATGGCTCACGTGGCCATACAACCTACAGAA 552
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 575 ACTCACACATACTTTGTTGGAAATGCTCCAATGGCTCACATGGCCATACAACCTACAGAA 634
Query 553 GAAATGCCTGATTTGCCATCTTACAAGAGGTTCTTCTTCAAATGCAGTGTAGTAGCAGCA 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GAAATGCCTGATTTGCCATCTTACAAGAGGTTCTTCTTCAAATGCAGTGTAGTAGCAGCA 694
Query 613 TCGAAATACAACATAAGCAACTGCGAGGATTTTGTGTGGGTAACCAAAGATGAGCTTTTG 672
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 695 TCGAAATACGACATAAGCAACTGCGAGGATTTTGTGTGGGTAACCAAAGACGAGCTCTTG 754
Query 673 GAATTCTTCCCGGAGCAAGCAGAATTCTTCAACAAGATGATCATTAGCTGAGTCACTCGC 732
||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 755 GAATTCTTCCCTGAGCAAGCTGAATTCTTCAACAAGATGATCATTAGCTGAGCCACTCAC 814
Query 733 ACCACAAAAACT 744
||||||||||||
Sbjct 815 ACCACAAAAACT 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5