BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920363
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14680.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1288 0.0
> AT1G14680.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G09060.1);
Has 8132 Blast hits to 6366 proteins in 685 species: Archae
- 171; Bacteria - 671; Metazoa - 4046; Fungi - 445; Plants
- 318; Viruses - 23; Other Eukaryotes - 2458 (source: NCBI
BLink). | chr1:5040861-5041733 FORWARD LENGTH=873
Length=873
Score = 1288 bits (697), Expect = 0.0
Identities = 817/875 (93%), Gaps = 7/875 (1%)
Strand=Plus/Plus
Query 21 ATGGATCTCTCGCGAGAAGTCGATGACTTTATCAAAGAGACAATCGATCACTCCTTAGGG 80
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATCTCTCGCGAGAAGTCGATGACTTTATCAAAGAGACAATCGATCACTCTTTAGGG 60
Query 81 CTTCCGATCTCCATGGATGCTCTCAAGAAAAAGCTCTACACGGCGGAAGAATCTCAGCGT 140
|||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCCGATATCCATGGACGTTCTCCAGAAAAAGCTCTACACGGCGGAAGAATCTCAGCGT 120
Query 141 CGTCTCCGTGAACAATATCTATCTCTCGTTTCGAGATTGAAAGAGAAAGACAAAGTAATC 200
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 121 CGTCTCCGTGAACAGTATCTATCTCTGGTTTCGAGATTGAAAGAGAAAGAAAAAGTAATC 180
Query 201 GATCTCGTGAGATCCGAAGCGAGTATGAATGCTCAGTCGTTGAAGAAATTCGTCGAAGAG 260
|||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 181 GATCTCGTTAGATCCGAAGCGAGTATGAATGCCCAGTCGCTGAAGAAATTCGTCGAAGAG 240
Query 261 AATCAGAAATTGGCAAGTGAGTGCGAGGATTTGGTGAATCAGTGTAAGAAGTGGGAAAGA 320
||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 241 AATCAGAAATTGGGAAGCGAGCGCGAGGATTTGGTGAATCAGTGTAAGAAGTGGGAAAAA 300
Query 321 GAATG-TATTCTTTATCATCAAGATCGTGAATCACTGATGGAATTTGGAAATGAAACTGA 379
||||| | |||||||||||||||||||||||||||| ||||| || || || ||||||||
Sbjct 301 GAATGCT-TTCTTTATCATCAAGATCGTGAATCACTCATGGAGTTCGGGAACGAAACTGA 359
Query 380 CGAGAGGGCTAGAGAAGCAGAATCTAGGGTTCGTGAATTGGAGGAAGAAGTTAGAAAAAT 439
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGAAAGGGCTAGAGAAGCAGAATCTAGGGTTCGTGAATTGGAGGAAGAAGTTAGAAAAAT 419
Query 440 GTCTGATGAAATCAAGAATCGAATCGAATCTGAAGAGGAGTGTTTGGTTGATTCAATTTT 499
||||||||||||||||| || |||||||||||||| || ||||||||||||||||| ||
Sbjct 420 GTCTGATGAAATCAAGAGCCGGATCGAATCTGAAGAAGATTGTTTGGTTGATTCAATATT 479
Query 500 GACATCGTTCGTTAGCAAAGATGAGAGTAAATCATTGGGGCGTATCTTCTTGGAGGCTAA 559
| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 GGCATCGTTCGTTAGTAAAGATGAGAGTATATCATTGGGGCGTATCTTCTTGGAGGCTAA 539
Query 560 C-GTT--GAAGACAAGTGTTGTCAAACATTGTTGAGAAAATGGGATCAGTTAAAGCCAAC 616
|| |||||||| |||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 540 TAGTGAAGAAGACAAATGTTGTGAAACTTTGTTGAGGAAATGGGATCAGTTAAAGCCAAC 599
Query 617 AACGCAAAAGGTTGTGTCTTTAGTGTCAATGGTGAAGAGAATTGAGAAGGAGAAAGAATG 676
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 GACGCAAAAGTTTGTGTCTTTAGTGTCAATGGTGAAGAGAATTGAAAAGGAGAAAGAATG 659
Query 677 TCTCATCT-TGAATCTTGCTAAAGCTGAGCAAGAAGTAGAACTTGTGAGCGAGCAAAACA 735
|||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 660 TCTCAT-TATGAATCTTGCTAAAGCAGAGCAAGAAGTTGAACTTGTGAGCGAGCAAAACA 718
Query 736 GAGAGCTGGATAGAGAAAATCGCAAGTTTTTGAGGCAATGTTGTGCAGAGAGAAGCCACG 795
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 719 GAGAGCTGGATAGAGAAAACCGCAAGTTTTTGAGGCAATGTTCTGCAGAGAGAAGCCATG 778
Query 796 GATCTAACAAGTTCATCAAGAGAAAGAGTCTCAAGTTGATGAGTAGCCCGATCGAGAAGA 855
||||||||||||||| ||||||||||||| ||||| |||||||||| ||||| |||||||
Sbjct 779 GATCTAACAAGTTCAACAAGAGAAAGAGTATCAAGATGATGAGTAGTCCGATTGAGAAGA 838
Query 856 GGATTGAATTGAGCAGCCAAGAATTTCTTGATTGA 890
|||||||||||||||||||||||||| | ||||||
Sbjct 839 GGATTGAATTGAGCAGCCAAGAATTTATCGATTGA 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44457220095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5