BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920365
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14686.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 1447 0.0
AT2G01920.1 | Symbols: | ENTH/VHS/GAT family protein | chr2:42... 139 5e-32
> AT1G14686.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr1:5045781-5046800 REVERSE LENGTH=1020
Length=1020
Score = 1447 bits (783), Expect = 0.0
Identities = 949/1029 (92%), Gaps = 12/1029 (1%)
Strand=Plus/Plus
Query 22 ATGAAGCTATGGAATCGCGCCGCCGTAGCTCTCAAAGACGGACCTAGTCTCATCGCTGCG 81
|||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1 ATGAAGCTTTGGAAACGCGCCGCCGTAGTTCTCAAAGACGGACCTAGTCTCATCGCGGCT 60
Query 82 GATGACATTCTCACAGCAGCCGTCGTGAAAGCTACAAGCCACGATGAGCTCTCAATCGAT 141
||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 61 GATGACATTCTCACAGCAGCCGTTGTGAAAGCTACAAGCCACGACGAGCTCTCCATTGAT 120
Query 142 ACAGAGAGCGCTCAATTCATCTACCGTCACGTTCTCTCTAGCCCGTCGAGCCTCAAGCAT 201
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 121 ACAGAGAGCGCTCAATTCATCTACCGTCACGTTCTCTCTAGCCCGTCAAGCCTCAAGCCT 180
Query 202 CTCGTAAGCTTAATCTCTTCTCGCGTGAAACGCACGCGAAGCTGGGCGGTTGCGTTAAAA 261
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTCGTAAGCTTAATCTCGTCTCGCGTGAAACGCACGCGAAGCTGGGCGGTTGCTTTAAAA 240
Query 262 GGCTTAATGCTAATGCACGGCTTCTTCCTCTGTAAAACAACCGTCGCCGAATCGATCGGA 321
|||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 241 GGCTTAATGCTAATGCACGGCTTCTTCCTCTGTAAATCAACCGTAGCAGAATCGATCGGA 300
Query 322 CGGTTACCGTTCGATCTTTCGAGTTTCGGCGAAGGTAGTTCACGGATTATGAGCAAATCC 381
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 CGGTTACCTTTCGATCTTTCGAGTTTCGGCGAAGGTAATTCACGGATTATGAGCAAATCC 360
Query 382 GGTGGGTTTAATCTCTTCGTACGCGCTTATTTCGCGTTTCTTGATCGAAGATCGATTCTA 441
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 GGTGGGTTTAATCTCTTCGTACGTGCTTATTTCGCGTTTCTTGATCGAAGATCGATTCTG 420
Query 442 TTTCACGACGGGAATCGTCATCGGTACAATGAAGAATCATCGGTTCTGATTAGACTTGTG 501
|||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 421 TTTCACGATGGGAATCGTCATCGATACAACGAAGAATCATCGGTTCTGATTCGACTTGTG 480
Query 502 ATTATACGTAAGATGCAGATTATTGTGGATTCTTTGATTAGGATTAAGCCGATTGGTGAA 561
||||| |||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 481 ATTATTCGTAAGATGCAGATTATTGTTGATTCTTTGATTAGAATCAAACCGATTGGTGAA 540
Query 562 ACCATGAAT-ATACCTTTGATTAATGAAGCAATGGAGAATGTGATTAGTGAGATCATGGA 620
| ||||| | |||||| ||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 541 AACATGA-TGATACCTGTGATTAATGAAGCTATGGAGAATGTGGTTAGTGAGATTATGGA 599
Query 621 GATTTACGGTTGGACTTGTCGTCGGATTGCTGAAGTTTTACCTAACGTGCATTCCAAGAT 680
|||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 600 GATTTACGGTTGGATTTGTCGTCGTATTGCTGAAGTTTTACCTAACGTGCACTCCAAGAT 659
Query 681 TGGGAAAACAGAAGCAGACTTGGCGTTGAAGATTGTTTCTAAATCTACGAAGCAAGGAAG 740
|| |||||||| |||||||||||||||||||||||| ||||||| | |||||||||| |
Sbjct 660 AGGTAAAACAGAGGCAGACTTGGCGTTGAAGATTGTTGCTAAATCCATGAAGCAAGGAGG 719
Query 741 AGAACTCAAAAAGTATTTTGAGTTTTGTAAAGATTTGGGAGTTTCTAATGCTCAAGAGAT 800
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 AGAGCTAAAAAAGTATTTTGAGTTTTGTAAAGACTTGGGAGTTTCTAATGCTCAAGAGAT 779
Query 801 TCCTAATTTCGTGCGGATTCCTGAAGCGGATGTGATTCATCTCGATGAACTCGTAAGGAC 860
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCCTAATTTCGTAAGGATTCCTGAAGCGGATGTGATTCATCTCGATGAACTCGTAAGGAC 839
Query 861 TTCGGAGATTGATTCGTGTGAGGAAGGTGTGgagagaacggagattgttgttgaagaaga 920
|| ||| || |||| ||||||| ||| ||||||||| ||||||| || ||||||||
Sbjct 840 ---GGCGATGGAGTCGTCTGAGGAAAGTGCGGAGAGAACAGAGATTGCTGAGGAAGAAGA 896
Query 921 agaagaagag-atagagac-gaagCCTGAATTGGTTTCTGATTTGATAACACTTGATCAT 978
|||||||||| | ||||| || | | ||| | ||||||||||||||||||||||||||
Sbjct 897 AGAAGAAGAGGA-AGAGATAGA-GAC-GAA--GCTTTCTGATTTGATAACACTTGATCAT 951
Query 979 GATGAGGAAGCTCCTGCTTCTCCTACGAGAGTAGTTGTTGTTGATATTCCAGATTTAATT 1038
|||||||||||||||| |||||| ||||||| ||||| |||||||||||||| ||||||
Sbjct 952 AATGAGGAAGCTCCTGCCTCTCCTCCGAGAGTTGTTGTCGTTGATATTCCAGACTTAATT 1011
Query 1039 AGCTTTTAA 1047
|||||||||
Sbjct 1012 AGCTTTTAA 1020
> AT2G01920.1 | Symbols: | ENTH/VHS/GAT family protein | chr2:426052-426990
FORWARD LENGTH=939
Length=939
Score = 139 bits (75), Expect = 5e-32
Identities = 180/227 (79%), Gaps = 21/227 (9%)
Strand=Plus/Plus
Query 223 CGCGTGAAACGCACGCG-AAGCTGGGCGGTTGCGTTAAAAGGCTTAATGCTAATGCACGG 281
|||||| ||| |||||| || |||| |||| || || ||| | || ||| || |||||||
Sbjct 217 CGCGTGGAACACACGCGTAA-CTGGACGGTGGCTTTGAAATGTTTGATGTTATTGCACGG 275
Query 282 CTTCTTC--CTCTGTAAAACA--ACCGTCGCCGAATCGATCGGACGGTTACCGTTCGATC 337
||| ||| ||| | || || ||||| ||| |||||||||||||||||||||||||
Sbjct 276 CTTGTTCTTCTCCG-GAATCATGACCGT---CGATTCGATCGGACGGTTACCGTTCGATC 331
Query 338 TTTCGAGTTTCGGC-GAAGGTAGTTCACGGATTA-TGAGCAAATCCGGTGGGTTTAATC- 394
||||| ||||||| ||||| | | | ||| ||| | || || ||||| ||||||| |
Sbjct 332 TTTCGGGTTTCGGGAGAAGGAAAT-CTCGGTTTAGT-AG-AA--CCGGTCGGTTTAA-CA 385
Query 395 TCTTCGTACGCGCTTATTTCGCGTTTCTTGATCGAA-GATCGATTCT 440
||||||| |||||||||||| ||||||||| |||| ||||||||||
Sbjct 386 TCTTCGTTCGCGCTTATTTCATGTTTCTTGA-CGAAAGATCGATTCT 431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5