BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920367
Length=509
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14688.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 448 3e-125
> AT1G14688.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: E3 Ubiquitin
ligase (InterPro:IPR022170); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:5049526-5050983
REVERSE LENGTH=641
Length=641
Score = 448 bits (242), Expect = 3e-125
Identities = 352/403 (87%), Gaps = 15/403 (4%)
Strand=Plus/Plus
Query 101 AGATGATGGTCCTTTGGGTGTTGTTTTTGAGGATACGGTGCTCTATGGGCAGGCTCTTAA 160
||||| || || ||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 123 AGATGGTGATCTTTTGGGTGTTGTTTTTGAGAATACGGTTATCTTTGGGCAGGCTCTTAA 182
Query 161 TA-TTGGTACCTCCATGACTGTTGTTGGTGAGGCTGTTAGAGACAAAGCTGGTAATCTCA 219
| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 183 -AGTTGGTACCTCTTTGACTTTTGTTGGTGAGGCTGTTAGAGACAAAGCTGGTAATCTCA 241
Query 220 TGATTCAAAAATCCAAAGAACAGTCTTTAATGGTGTTCT-GTGGAGAGAACTCCTTTGAT 278
|||||||||||||||| |||||||||||||| ||||| | ||| ||||| ||||||||||
Sbjct 242 TGATTCAAAAATCCAAGGAACAGTCTTTAATAGTGTT-TAGTGAAGAGAGCTCCTTTGAT 300
Query 279 AAAATGGTTGGA-AACATGAAGTCAAATTCAGAG-TTT-TACATTTTCTACTCCAAGATC 335
| |||||| | |||||||||||| | |||||| ||| | | | || | ||||||||
Sbjct 301 GAGATGGTT-AATAACATGAAGTCACAGTCAGAGCTTTGTGTA-ATACT-CGCCAAGATC 357
Query 336 TTCGGAACTGTTGCTGTGGCTGTGGCCGTCGTGTACGGTGTGGATTTTGTAAGAAAGGTT 395
|||||| || ||||||||||| | |||||||||||||||||||||| || ||||||||||
Sbjct 358 TTCGGATCTATTGCTGTGGCTATAGCCGTCGTGTACGGTGTGGATTATGCAAGAAAGGTT 417
Query 396 TTGTTACCATTCGTGTGGAAGAAAAAGGACTTAGGTAACAACAACAGATCAGAGAATGAT 455
|||||||||||||||||||||||||||||||||||| ||| || | ||| |||||| |
Sbjct 418 TTGTTACCATTCGTGTGGAAGAAAAAGGACTTAGGTGACAGCA---GTTCACAGAATGGT 474
Query 456 AACTCAGACAGCGAAGATAC--ACATCAGTGATTTCTAGGACT 496
| |||||||||||||||||| |||||||||||||||||||||
Sbjct 475 AGCTCAGACAGCGAAGATACCGACATCAGTGATTTCTAGGACT 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24313327148
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5