BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920383
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14830.1 | Symbols: ADL1C, ADL5, DRP1C, DL1C | DYNAMIN-like ... 3206 0.0
> AT1G14830.1 | Symbols: ADL1C, ADL5, DRP1C, DL1C | DYNAMIN-like
1C | chr1:5107421-5111670 REVERSE LENGTH=2323
Length=2323
Score = 3206 bits (1736), Expect = 0.0
Identities = 1837/1887 (97%), Gaps = 2/1887 (0%)
Strand=Plus/Plus
Query 1 TGTGATACTTTCCAGGAAACATGGCGACGATGAAAAGTTTGATAGGTCTGATTAACAAAA 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 TGTGATACGTTCCAGGAAACATGGCGACGATGAAAAGTTTGATAGGTCTGATAAACAAAA 240
Query 61 TCCAGAGGGCTTGTACTGTCCTCGGAGATCATGGCGGTGAAGGAATGTCGCTTTGGGAAG 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCAGAGGGCGTGTACTGTCCTCGGAGATCATGGCGGTGAAGGAATGTCGCTTTGGGAAG 300
Query 121 CTCTACCAACCGTCGCTGTTGTTGGTGGCCAGAGTTCCGGAAAATCTTCAGTTCTAGAAA 180
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCTCCCAACCGTCGCTGTCGTTGGTGGCCAGAGTTCCGGAAAATCTTCAGTTCTAGAAA 360
Query 181 GTGTTGTGGGAAGAGATTTTCTGCCTCGTGGATCTGGTATCGTTACTAGGAGGCCATTGG 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 GTGTTGTGGGAAGAGATTTTCTGCCTCGTGGATCTGGTATCGTTACAAGGAGGCCATTGG 420
Query 241 TGTTGCAGCTTCATAAGACTGAAGAAGGGACAACTGAGTACGCTGAGTTTCTTCATGCTC 300
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 TGTTGCAACTTCATAAGACTGAAGACGGGACAACTGAGTACGCTGAGTTTCTTCATGCTC 480
Query 301 CTAAGAAGAGATTTGCTGATTTTGCTGCTGTGCGGAAGGAAATTGAGGATGAAACTGATC 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 CTAAGAAGAGATTTGCTGATTTTGCTGCTGTGCGGAAAGAAATTGAGGATGAAACTGATC 540
Query 361 GTATTACTGGGAAGTCTAAACAAATCTCAAACATTCCAATTCAGCTGAGCATATATTCTC 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTATTACTGGGAAGTCAAAACAAATCTCAAACATTCCAATTCAGCTGAGCATATATTCTC 600
Query 421 CTAATGTTGTTAATCTGACGCTCATAGATCTTCCGGGTTTGACGAAGGTTGCTGTAGAGG 480
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 601 CTAATGTTGTTAATCTGACGCTCATAGATCTTCCGGGTTTGACCAAGGTCGCTGTAGATG 660
Query 481 GACAACCGGATAGTATTGTCCAAGACATTGAAAATATGGTCCGCTCTTATGTTGAAAAGC 540
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 661 GACAACCGGAAAGTATTGTCCAAGACATTGAAAATATGGTCCGGTCTTATGTTGAAAAGC 720
Query 541 CAAATTGCATCATATTGGCTATTTCTCCAGCAAATCAAGATATTGCTACCTCGGACGCTA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 721 CAAATTGCATCATATTGGCTATTTCTCCAGCAAATCAAGATATTGCTACCTCAGATGCTA 780
Query 601 TAAAACTTGCTAGAGAAGTTGATCCTACAGGCGAAAGGACTTTTGGAGTTGCAACCAAGC 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 TAAAACTTGCTAGAGAAGTTGATCCTACAGGCGAAAGGACTTTTGGTGTTGCAACCAAGC 840
Query 661 TTGATATCATGGATAAAGGAACAGATTGTCTAGACGTTCTTGAGGGAAGGTCGTACCGTT 720
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 841 TTGATATCATGGATAAAGGAACAGATTGTCTAGATGTTCTTGAGGGAAGGTCATACCGTT 900
Query 721 TGCAACATCCCTGGGTTGGAATTGTGAATCGTTCACAAGCTGATATTAATAAGAGGGTCG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 TGCAACATCCCTGGGTTGGAATTGTGAATCGTTCACAAGCTGATATTAATAAGAGAGTCG 960
Query 781 ATATGATTGCTGCACGTAGAAAAGAGCGAGAATATTTTGAAACAAGCCCTGAATACGGGC 840
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 961 ATATGATTGCTGCACGTAGAAAAGAGCAAGAATATTTTGAAACAAGCCCTGAATACGGGC 1020
Query 841 ACTTAGCTAGTAGAATGGGATCAGAATATCTAGCAAAACTCTTGTCTCAGCACTTAGAGA 900
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACTTAGCCAGTAGAATGGGATCAGAATATCTAGCAAAACTCTTGTCTCAGCACTTAGAGA 1080
Query 901 CTGTTATCAGGCAGAAAATACCCAGTATTGTTGCTTTGATCAACAAAAGCATCGATGAGA 960
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTGTTATCAGGCAGAAAATCCCCAGTATTGTTGCTTTGATCAACAAAAGCATCGATGAGA 1140
Query 961 TAAATGCAGAGCTGGATAGGATTGGGAGACCCATTGCAGTAGATTCAGGAGCCCAACTCT 1020
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 TAAATGCAGAACTTGATAGGATTGGGAGACCCATTGCAGTAGATTCAGGAGCCCAACTTT 1200
Query 1021 ACACAATTTTGGAACTCTGCCGGGCATTTGATCGTGTCTTTAAGGAGCACTTGGATGGAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ACACAATTTTGGAACTCTGCCGGGCATTTGATCGTGTCTTTAAGGAGCACTTGGATGGAG 1260
Query 1081 GACGACCTGGTGGAGACCGGATTTATGGAGTTTTTGACCATCAATTACCAGCAGCCTTAA 1140
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1261 GACGACCTGGTGGAGACCGAATTTATGGAGTTTTCGACCATCAATTACCAGCAGCCTTAA 1320
Query 1141 AGAAACTTCCCTTTGATCGACATCTCTCTACCAAAAATGTTCAGAAGGTTGTTTCAGAAG 1200
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1321 AGAAACTTCCCTTTGATCGACATCTGTCTACCAAAAATGTTCAGAAGGTTGTTTCAGAAG 1380
Query 1201 CTGATGGTTATCAGCCGCATCTTATTGCTCCTGAACAAGGATACAGAAGGCTCATTGATG 1260
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CAGATGGTTATCAGCCGCATCTTATTGCTCCTGAACAAGGATACAGAAGGCTCATTGATG 1440
Query 1261 GATCCATAAGCTATTTCAAAGGACCAGCTGAAGCCACTGTCGATGCAGTGCATTTCGTAT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GATCCATAAGCTATTTCAAAGGACCAGCTGAAGCCACTGTCGATGCAGTGCATTTCGTAT 1500
Query 1321 TGAAGGAGCTGGTCAGAAAGTCCATTTCAGAAACAGAGGAACTGAAGCGATTCCCTACTC 1380
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1501 TGAAGGAGCTGGTCAGAAAGTCAATTTCAGAAACAGAGGAACTGAAGCGTTTCCCGACTC 1560
Query 1381 TAGCAAGCGATATAGCAGCTGCTGCAAATGAAGCTCTCGAAAGATTCAGAGATGAAAGCA 1440
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1561 TAGCAAGCGATATAGCAGCTGCTGCAAATGAAGCTCTTGAAAGATTCAGAGACGAAAGCA 1620
Query 1441 GGAAAACGGTTCTACGTCTGGTGGATATGGAATCCAGCTACCTCACGGTTGAGTTCTTCA 1500
||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1621 GGAAAACGGTTTTGCGTCTGGTGGATATGGAATCTAGCTACCTCACGGTTGAGTTCTTCA 1680
Query 1501 GGAAACTGCATCTTGAACCCGAGAAAGAGAAACCAAACCCAAGGAATGCCCCAGCACCAA 1560
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GGAAACTCCATCTTGAACCCGAGAAAGAGAAACCAAACCCAAGGAATGCCCCAGCACCAA 1740
Query 1561 ACGCAGACCCCTACTCCGATAATCACTTCAGAAAGATTGGATCCAACGTGAGTGCATACA 1620
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1741 ACGCAGACCCCTACTCCGATAATCACTTCAGAAAGATCGGATCCAACGTGAGTGCATACA 1800
Query 1621 TAAACATGGTCTGCGACACATTGAGAAACTCACTTCCCAAAGCTGTCGTTTACTGCCAAG 1680
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1801 TAAACATGGTCTGCGACACATTGAGAAACTCTCTTCCCAAAGCTGTCGTTTACTGCCAAG 1860
Query 1681 TTAGAGAAGCTAAGAGATCGCTTCTCAACTTCTTCTACGCTCAAGTTGGCAGGAAAGAGA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TTAGAGAAGCTAAGAGATCGCTTCTCAACTTCTTCTACGCTCAAGTTGGCAGGAAAGAGA 1920
Query 1741 AGGAGAAGCTGGGTGCGATGTTGGACGAAGACCCACAGCTGATGGAACGAAGAGGAACCT 1800
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 AGGAGAAGCTGGGTGCTATGTTGGACGAAGACCCACAGCTGATGGAACGAAGAGGAACCT 1980
Query 1801 TAGCTAAACGGCTCGAGCTTTACAAACAAGCTAGAGATGACATCGATGCTGTGGCTTGGA 1860
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1981 TAGCTAAACGGCTAGAGCTTTACAAACAAGCTAGAGACGACATCGATGCAGTGGCTTGGA 2040
Query 1861 AGTAAGGA--TTTGCTAAGAAATATTC 1885
||||||| |||||||||| ||||||
Sbjct 2041 AGTAAGGGGGTTTGCTAAGACATATTC 2067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93322813155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5