BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920393
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14900.1 | Symbols: HMGA | high mobility group A | chr1:5138... 913 0.0
> AT1G14900.1 | Symbols: HMGA | high mobility group A | chr1:5138334-5139432
REVERSE LENGTH=1025
Length=1025
Score = 913 bits (494), Expect = 0.0
Identities = 608/661 (92%), Gaps = 16/661 (2%)
Strand=Plus/Plus
Query 1 ACACTCTCTCTACGCTTGACATGGCCTTCGATCTTCACCATAGCTCAGCTTCAGATACGC 60
|||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 60 ACACACTCTCTACGCTTGACATGGCCTTCGATCTCCACCATGGCTCAGCTTCAGATA--- 116
Query 61 CGCATTCATCAGAATC-TCCGTCGTTTTCTCTCCCACCTTATCCTGAGATGATAATGGAA 119
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 117 CGCATTCATCAGAA-CTTCCGTCGTTTTCTCTCCCACCTTATCCTCAGATGATAATGGAA 175
Query 120 GCGATTGAGTCCTTGAACGATAAGAATGGCTGCAACAAAACGACGATTGCTAAGCACATC 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 176 GCGATTGAGTCCTTGAACGATAAGAACGGCTGCAACAAAACGACGATTGCTAAGCACATC 235
Query 180 GAGTCAACTCAACAAACTCTACCGCCGTCACACACGACGCTGCTCAGCTACCATCTCAAC 239
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 236 GAGTCGACTCAACAAACTCTACCGCCGTCACACATGACGCTGCTCAGCTACCATCTCAAC 295
Query 240 CAGATGAAGAAGAAT-GGTCAGCTTATCATGGTGAAGAACAATTATATGAAGCCAGATCC 298
||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 296 CAGATGAAGAA-AACCGGTCAGCTAATCATGGTGAAGAACAATTATATGAAACCAGATCC 354
Query 299 AGATGCTCCGCCTAAGCGTGGTCGTGGCCGTCCTCCGAAGCAGAAAATTCAGGCGGAATC 358
||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||||
Sbjct 355 AGATGCTCCTCCTAAGCGTGGTCGTGGCCGTCCTCCGAAGCAGAAGACTCAGGCCGAATC 414
Query 359 TGACGCCGCCGCTGCTGCTG------CTGCCGCTGTT-TC-CG-CAGATCCGCCTAGATC 409
||||||||| |||||||||| ||||| | || || | ||||||||||||||||
Sbjct 415 TGACGCCGCTGCTGCTGCTGTTGTTGCTGCCACCGTCGTCTCTACAGATCCGCCTAGATC 474
Query 410 TCGCGGTCGTCCACCGAAGCCGAAAGATCCATCGGAGCCGCCTAAGGAGAAGGTCGCTAC 469
||| || |||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 475 TCGTGGCCGTCCACCGAAGCCGAAAGATCCATCGGAGCCTCCCCAGGAGAAGGTCATTAC 534
Query 470 CGGATCTGGAAGACCACGAGGACGACCACCGAAGAGATCGAGAACAGATTCGGAGACGGT 529
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 535 CGGATCTGGAAGGCCACGAGGACGACCACCGAAGAGACCGAGAACAGATTCGGAGACGGT 594
Query 530 TGCTGCGCCGGAGCCGGCAGCTCAGGCAACCGGTGAGCGTAGAGGACGTGGGAGACCTCC 589
|||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 595 TGCTGCGCCGGAACCGGCAGCTCAGGCGACAGGTGAGCGTAGGGGACGTGGGAGACCTCC 654
Query 590 GAAGGTGAAGACGACGGTGGTTGCGCCGGTTGGGTGTTGAATTATTCAGTACTTATGCAA 649
|||||||||| ||||||||||||| ||||||||||| ||||||| || ||||||||||||
Sbjct 655 GAAGGTGAAGCCGACGGTGGTTGCTCCGGTTGGGTGCTGAATTAATCGGTACTTATGCAA 714
Query 650 T 650
|
Sbjct 715 T 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31396341875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5