BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920394
Length=317
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17530.1 | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase ho... 379 7e-105
> AT4G17530.1 | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase
homolog 1C | chr4:9773548-9775607 REVERSE LENGTH=965
Length=965
Score = 379 bits (205), Expect = 7e-105
Identities = 215/220 (98%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 98 AGGCTTTCGCAGATGAACTTGGAATCCCATTCTTGGAAACAAGTGCTAAGAATGCTACCA 157
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 593 AGGCTTTCGCTGATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAGAATGCTACCA 652
Query 158 ATGTCGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACAAGAATGGCGAGCCAAC 217
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 653 ATGTCGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACCAGAATGGCGAGCCAAC 712
Query 218 CTGCAGGAGGATCTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTTAACCAGCAAT 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CTGCAGGAGGATCTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTTAACCAGCAAT 772
Query 278 CAGGTTGCTGCTCCTCTTGATTCGCTTTGGTAACACTTAA 317
|||| ||||||||||||| |||||||||||||||||||||
Sbjct 773 CAGGCTGCTGCTCCTCTTAATTCGCTTTGGTAACACTTAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14728450457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5