BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920395

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19720.1 | Symbols: ARC5, DRP5B | P-loop containing nucleosi...  89.8    9e-18


> AT3G19720.1 | Symbols: ARC5, DRP5B | P-loop containing nucleoside 
triphosphate hydrolases superfamily protein | chr3:6850371-6855513 
REVERSE LENGTH=2678
Length=2678

 Score = 89.8 bits (48),  Expect = 9e-18
 Identities = 72/83 (87%), Gaps = 4/83 (5%)
 Strand=Plus/Plus

Query  87   GCGATTGAGGAGCGGTGGAGTCTTTACGAGGCTTATAATGAGT--C-C-CTTTGGCGCAG  142
            ||||||||||||||||||||||||||||| ||||| || ||||  | | |||||||||||
Sbjct  185  GCGATTGAGGAGCGGTGGAGTCTTTACGAAGCTTACAACGAGTTACACGCTTTGGCGCAG  244

Query  143  GAATTCGAGACGTCGTCCAAAGC  165
            ||||| |||||| ||| | ||||
Sbjct  245  GAATTGGAGACGCCGTTCGAAGC  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9400069063


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5