BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920406
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15000.1 | Symbols: scpl50 | serine carboxypeptidase-like 50... 1818 0.0
> AT1G15000.1 | Symbols: scpl50 | serine carboxypeptidase-like
50 | chr1:5168596-5170066 FORWARD LENGTH=1471
Length=1471
Score = 1818 bits (984), Expect = 0.0
Identities = 1237/1359 (91%), Gaps = 17/1359 (1%)
Strand=Plus/Plus
Query 11 TAGTGGCGATAATGGAGCACGGCC-CTACATTCTTCTTCTTGCTTTCCACTCTCGTCCTC 69
|||||| ||||||||||| ||| ||||| ||||| | ||||||||||||||| |||||
Sbjct 7 TAGTGGAAATAATGGAGCA-AGCCACTACACTCTTCATATTGCTTTCCACTCTCCTCCTC 65
Query 70 GCCGTTTCCGTTAAGTCTCCTCCGCCTCCTCTATTTCCCGATGAAGCTCTCCCCACTAAA 129
||||| |||||| ||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 66 GCCGTCTCCGTTGAGTCTCCTCAGCCACCGCTATTTCCCGATGAAGCTCTCCCCACTAAA 125
Query 130 TCCGGATACCTTCCGGTTAAACCAGC-CTCAGGCTCCTTCATGTTTTATGCCTTCTACGA 188
|| || ||||| ||||||||||| || | | ||||| | |||||| ||||||||||||||
Sbjct 126 TCTGGCTACCTCCCGGTTAAACCCGCAC-CCGGCTCGTCCATGTTCTATGCCTTCTACGA 184
Query 189 AGCCCAAAAGCCGACCACACTTCTTCCCGACACTCCGCTCCTCGTTTGGCTCCAAGGTGG 248
||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 185 AGCCCAAGAGCCAACCACACCTCTTCCTGACACTCCGCTCCTCGTTTGGCTCCAAGGTGG 244
Query 249 GCCAGGCTGCTCTTCAATGATTGGCAACTTCTACGAGCTCGG-CCCGTGGCGCGTTA-TG 306
|||||||||||||||||||||||||||||| ||||||||||| ||| ||||| | || |
Sbjct 245 GCCAGGCTGCTCTTCAATGATTGGCAACTTTTACGAGCTCGGTCCC-TGGCGTG-TAGTT 302
Query 307 TCAAGCGCCACTGAGCTTGAGCGCAACCCAGGCGCTTGGAACCGTCTCTTTGGGCTACTC 366
||| ||||||| || || ||||||||||| ||||| ||||||||||| || || |||||
Sbjct 303 TCACGCGCCACAGACCTCGAGCGCAACCCCGGCGCATGGAACCGTCTATTCGGACTACTT 362
Query 367 TTCGTGGATAACCCTATAGGAGTCGGATTCAGCATCGCCTCCTCTA-AACAAGACATACC 425
|| ||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 363 TTTGTGGATAACCCAATAGGAGTCGGATTCAGCATCGCAGCCTC-ACAACAAGACATACC 421
Query 426 CACAAATCAGAGACAGGTCGCTGAGCATCTTTACGCAGCTCTCGTGGAGTTCCTTGAGCA 485
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 422 CACAAATCAGAGACAGGTCGCTGAGCATCTTTACGCCGCTCTCGTGGAGTTCCTTGAACA 481
Query 486 AAACCCAGGCTTTGAAAACCGACCGGTTTACTTCACTGGCGAGAGCTACGCTGGTAAGTA 545
||||||| |||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 482 AAACCCAAGCTTCGAAAACCGACCGGTTTACTTCACTGGAGAGAGCTACGCCGGGAAGTA 541
Query 546 CGTTCCAGCCATTGGATACTATATCCTTAAAGAGAAACCCAATGGGAAAGTGAATCTAAA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CGTTCCAGCCATTGGATACTATATCCTTAAAGAGAAACCCAATGGGAAAGTGAATCTAAA 601
Query 606 GGGCCTAGCCATTGGAAACGGGCTGACCGATCCCG-TGACCCAGGTCCAAACCCATGCGG 664
||| |||||||||||||||||||||||||| |||| |||||||||| |||||||||||||
Sbjct 602 GGGGCTAGCCATTGGAAACGGGCTGACCGA-CCCGGTGACCCAGGTTCAAACCCATGCGG 660
Query 665 TCAATGTTTACTACTCGGGTCTGGTCAACGCTAAACAGAGAGGTGAAGTGGAGAAAGCGC 724
|||| || ||||||||||||||||||||||| |||||||||| |||| || | |||||||
Sbjct 661 TCAACGTCTACTACTCGGGTCTGGTCAACGCAAAACAGAGAGTTGAACTGCAAAAAGCGC 720
Query 725 AGGAGATAGCCGTAGCTCTCGTGAAGTCACAGAAATGGCGTGAAGCAGCAGACGCGAGGA 784
|||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 AGGAGATATCTGTAGCTCTCGTGAAGTCCCAGAAATGGCGTGAAGCAGCAGACGCGAGGA 780
Query 785 CGGAGCTGTTGACGCTACTAAGTAACATGACAGGACTCGCGACGCTATACAACACGGCAC 844
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 CCGAACTGTTGACGCTACTAAGTAACATGACAGGACTCGCGACGCTCTACAACACGGCAC 840
Query 845 GTTCGATTCCGTACAGAACAGACCTCGTGTTGGACCTTCTA-AACCAGAGAGAGGCTAAG 903
| ||||||| |||||||||||||||||| ||||||| || ||||||||||| || ||
Sbjct 841 GGGCGATTCCATACAGAACAGACCTCGTGGTGGACCT-CTTGAACCAGAGAGAAGCAAAA 899
Query 904 CGAGTTTTGGGAGTGAGCGAAACAATGCGTTTTGAGGATTGTAGTGATGAAGTAGAAGAT 963
|| |||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||
Sbjct 900 CGTGTTTTGGGAGTGAGTGAAACGGTTCGTTTTGAGGAATGTAGTGATGAAGTAGAAGAT 959
Query 964 GTGCTGCGAGAAGATGTGATGAAGAGCGTTAAGTTCATGGTGGAGTACGCATTAGAGAGG 1023
||| |||| | ||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 960 GTGTTGCGGGCAGACGTGATGAAGAGCGTAAAGTTCATGGTGGAGTACGCATTGGAGAGG 1019
Query 1024 ACTCAAGTGTTGCTGTATCAAGGCATGCTGGATCTAAGAGACGGTGTCGTTTCGACGGAG 1083
|||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1020 ACTCAAGTCTTGCTGTATCAAGGTATGCTTGATCTAAGAGACGGCGTCGTTTCGACGGAG 1079
Query 1084 GAGTGGGTGAAGACTATGAACTGGTCGGGGTTGGGGATGTTCTCGACGGCGGAGAGGAGG 1143
|||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||| |
Sbjct 1080 GAGTGGATGAAGACTATGAACTGGTCAGGATTGGGAATGTTCTCGACGGCGGAGAGGCGT 1139
Query 1144 GTGTGGAAGGATGAAGACGGTGCGGTCGCTGGATATGTTCAAAGATGGGGGAATTTGTGC 1203
|||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 1140 GTGTGGAAGGATGAAGACGGTGTGGTCGCTGGTTATGTTCAGAGATGGGGGAATTTGTGC 1199
Query 1204 CACGTGGCGGTTTCAGGAGCTGGACATTTTGTTCCGACAGATAAAGCTGTTAATTCAAGG 1263
|||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1200 CACGTGGCGGTTACAGGAGCTGGTCATTTTGTTCCGACAGATAAAGCTGTGAATTCAAGG 1259
Query 1264 GATATGATTGAAGGCTGGGTTTTGGGGAAAGGATTGTTCGGTGGTAATGAAGATGTGAAG 1323
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1260 GATATGATTGAAGGTTGGGTTTTGGGGAAAGGATTGTTCGGTGGTAA--A-GATGTGAAG 1316
Query 1324 CAGACAATTTCATCGAGCTTTTACAATTCAATCTAGATA 1362
||||||| ||| |||||||| ||| |||||||||| |||
Sbjct 1317 CAGACAACTTCGTCGAGCTTATACCATTCAATCTAAATA 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67921337385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5