BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920409
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15030.1 | Symbols: | Protein of unknown function (DUF789) ... 1685 0.0
> AT1G15030.1 | Symbols: | Protein of unknown function (DUF789)
| chr1:5177529-5180049 FORWARD LENGTH=1645
Length=1645
Score = 1685 bits (912), Expect = 0.0
Identities = 1047/1113 (94%), Gaps = 5/1113 (0%)
Strand=Plus/Plus
Query 14 AAGAGAGATGTTGGGAGCTGGATTTCAGTTGACTCAGCTTCAGAGAGCTCAAAGAGACGT 73
||||||||||||||||||||||||| | || |||||||||||||||||||||| |||||
Sbjct 360 AAGAGAGATGTTGGGAGCTGGATTTAACTTCACTCAGCTTCAGAGAGCTCAAATTGACGT 419
Query 74 CTTTTATGGCGGCAGATCGATTCACACTAAGGAACGCGAGAACGGCTCTGCATTGCAGAA 133
|| ||||||| ||||||||| |||||||||||| || |||||||||||||||||| |||
Sbjct 420 CTCTTATGGCTGCAGATCGAGTCACACTAAGGATCGTGAGAACGGCTCTGCATTGTTGAA 479
Query 134 ACACCATGTTTCTGAGGCATCTTCAAGTAATGTGGAACGGTTTTTGGAGTCGGTGACACC 193
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 480 ACACCATGTTTCTGAGGCATCGTCAAGTAATGTGGAACGGTTTTTGGATTCGGTGACACC 539
Query 194 ATCTGTGCCGGCTCACTGTTTATCTAAGACAACAGTTAGGGAAAGGA-GAGGCAGTGACA 252
|||||| |||||||||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct 540 ATCTGTTCCGGCTCACTATTTATCTAAGACAATAGTTAGGGAAA-GAGGAGGCAGTGATG 598
Query 253 TTGAGTCGCAAGTTCCTTACTTTGTTCTTGGAGATGTATGGGAATCGTTTGCAGAGTGGA 312
||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGAGTCTCAAGTTCCTTATTTTCTTCTTGGAGATGTATGGGAATCGTTTGCAGAGTGGA 658
Query 313 GTGCTTATGGCATTGGAGTTCCTCTCACTTTGAATAACAATAAAGATCGAGTCTTTCAAT 372
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 GTGCTTATGGCATTGGAGTTCCTCTCACTTTGAATAACAATAAAGATCGTGTCTTTCAAT 718
Query 373 ATTATGTGCCTTCGCTTTCCGGTATTCAAGTATATGCTGATGTTGATGCTTTAACTTCAT 432
| || ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 719 ACTACGTGCCCTCGCTTTCTGGTATTCAAGTATACGCTGATGTTGATGCTTTAACTTCAT 778
Query 433 CTCTTCAAGCAAGGCGGCAAGGGGAGGAGAGCGAAAGCGATTTCAGGGATTCAAGTAGTG 492
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 779 CTCTTCAAGCAAGGCGGCAAGGTGAGGAGAGCGAAAGCGATTTTAGGGATTCAAGTAGTG 838
Query 493 AAGGAAGCAGTAGTGAATCCGAAAGAGGACTTTCTTATCCAAAAGAGCAGATCTCTGCTA 552
||||||||||||||||||| ||||||||||| | |||| |||||||||||||||| ||||
Sbjct 839 AAGGAAGCAGTAGTGAATCTGAAAGAGGACTCTGTTATTCAAAAGAGCAGATCTCCGCTA 898
Query 553 GAATGGACAAACTCTCGTTAAGAAAGGAGCATCACGAAGATTCGTCTAGTGATGATGGCG 612
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 GAATGGACAAACTCTCCTTAAGAAAGGAGCATCAAGAAGATTCGTCTAGTGATGATGGCG 958
Query 613 AGCCTTTAACCTCTCATGGTCGTTTGATATTTGAGTATCTTGAACGTGATCTTCCTTACA 672
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGCCTTTAAGCTCTCAAGGTCGTTTGATATTTGAGTATCTTGAACGTGATCTTCCTTACG 1018
Query 673 TCCGTGAACCCTTTGCCGACAAGATGTCTGACCTTGCCTCTAGATTTTCCGAGCTGAATA 732
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1019 TCCGTGAACCCTTTGCCGACAAGATGTCTGACCTTGCCTCTAGATTTCCCGAGCTGAAGA 1078
Query 733 CGCTAAGAAGCTGTGATTTACTACCTTCAAGCTGGTTTTCTGTGGCATGGTACCCAATAT 792
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 1079 CGCTAAGAAGCTGTGATTTGCTTCCTTCAAGCTGGTTTTCTGTGGCATGGTACCCAATTT 1138
Query 793 ACAAGATACCCACAGGACCGACCCTCAAGGATCTGGATGCTTGTTTCTTGACTTATCATT 852
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1139 ACAAAATACCCACAGGACCGACACTCAAGGATCTGGATGCTTGTTTCTTGACCTATCATT 1198
Query 853 CCCTTCACACACCCTTTCAATGTCCAGGAGTTACAACAGGGTCTATGCATGTGGTGCAGC 912
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1199 CCCTTCACACACCCTTTCAAGGTCCAGGCGTTACAACAGGGTCTATGCATGTGGTGCAGC 1258
Query 913 CAAGGGAAAGTGTTGAGAAGATGGAACTGCCTGCCTTTGGTCTCGCCTCATACAAGTTGA 972
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1259 CAAGGGAAAGTGTTGAGAAGATGGAACTGCCTGTCTTTGGTCTCGCCTCATACAAGTTGA 1318
Query 973 GAGGTTCTGTATGGACAGGCTTCAGG-GGCTCTGGACACCAGGTCGTGAACTCCCTCTTC 1031
||||||||||||||||| |||| || ||||| || |||||| ||| |||||| ||||||
Sbjct 1319 GAGGTTCTGTATGGACAAGCTTT-GGTGGCTCGGGCCACCAGCTCGCGAACTCTCTCTTC 1377
Query 1032 CAAGCCGCAGACAATTGGCTGAGGTTGCGTCAAGTCAACCATCCAGATTTCATCTTCTTC 1091
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 CAAGCCGCAGATAATTGGCTGAGGTTGCGTCAAGTCAACCATCCTGATTTCATCTTCTTC 1437
Query 1092 TGCCGCCGGTAATGATGTGATTATACTATGATG 1124
|||||||||||||||| |||||||||||||||
Sbjct 1438 TGCCGCCGGTAATGATA-GATTATACTATGATG 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55120198410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5