BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920412
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15060.1 | Symbols: | Uncharacterised conserved protein UCP... 2843 0.0
> AT1G15060.1 | Symbols: | Uncharacterised conserved protein UCP031088,
alpha/beta hydrolase | chr1:5183607-5186974 REVERSE
LENGTH=2301
Length=2301
Score = 2843 bits (1539), Expect = 0.0
Identities = 1697/1773 (96%), Gaps = 11/1773 (1%)
Strand=Plus/Plus
Query 1 AATCTGCCAGAGTCTGTGCCATGTCCACCATGCCTCCCCAATTCCCCTTGGAGATCCGCT 60
|||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 99 AATCTGCCAGAGTCCGTACCATGTCCACCATGCCTCCACAATTTCCCTTGGAGATCCGCT 158
Query 61 CAGCTCTTCGCCGAGCTTCCTCCACCGTATATTTCCACTGCTCCATCGGCACCGTCACT- 119
||||||||||||| |||||||||||||| ||| ||||| | |||||| |||||||||||
Sbjct 159 CAGCTCTTCGCCGGGCTTCCTCCACCGTCTATCTCCACCGTTCCATCAGCACCGTCACTA 218
Query 120 C--CTCCTTCGTTTCGTCACCGCACGACGTTGTTTCGACCGAGAGCTTTCTCTTCTTCCT 177
| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 219 CTACTCCTTCGTTTCGTCACCGAACGACGTTGTTACGACCGAGAGCTTTCTCTTCTTCCT 278
Query 178 CTGTTAAGCTACCCACGAAACCTTCTCTTTGCACCGCCGACGAGCTTCATTACGTCTCTG 237
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 279 CTGTTAAGCTCCCCACGAAACCTTCTCTTTGCACCGCCGACGAGCTTCATTACGTCTCCG 338
Query 238 TTCCTAACAGCGATTGGCGTCTCGCTCTCTGGCGTTACTTGCCTCCTCCTCAGGCTCCGA 297
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 339 TTCCTAACACCGATTGGCGTCTCGCTCTCTGGCGCTACTTGCCTCCTCCTCAGGCTCCGA 398
Query 298 CGAGGAATCATCCGTTGTTGCTATTGTCTGGAGTAGGAACTAATGCCATCGGATATGATT 357
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 399 CGAGGAATCATCCATTGTTACTGTTGTCTGGAGTAGGAACTAATGCCATCGGATATGATT 458
Query 358 TATCTCCTGGTTGCTCTTTTGCAAGACATATGTCTGGTCAGGGATTTGAGACCTGGATTC 417
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 459 TATCTCCTGGTTGCTCTTTTGCAAGGCATATGTCTGGACAGGGATTTGAGACTTGGATTC 518
Query 418 TCGAGGTTCGTGGAGCTGGATTGAGTACACGAGTATCTGATCTTAAGGATGTTGAGGAAT 477
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 519 TCGAGGTTCGTGGAGCTGGATTGAGTACACGAGTATCTGATCTTAAGGACGTTGAGGAAT 578
Query 478 CTGCTCACGAATTGTCGAATCGGATAGAATCTACTGCTAGAGCTGCTGCAGGTAAAGAAA 537
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 579 CTGCTCATGAATTGTCGAATCAGATAGAATCTACTGCTAGAGCTGCTGCAGGTAAAGAAA 638
Query 538 CTTCTTCTGATGAAAA-CAAGGCTACTGATATCGTGGA-A--AGT--A-GTGCACCAGCG 590
||| |||||||||||| | || |||||||||| |||| | ||| | ||||||||||
Sbjct 639 CTTGTTCTGATGAAAAGC-AGACTACTGATATTATGGACAGTAGTGCACCTGCACCAGCG 697
Query 591 TCGGATGTTTCAGTTGTTGGCGAATCATCAGCCTGGGATGAATCACAACTTGTGGCGAGA 650
|||||||||||||||||||||||| |||| || ||||| || ||||| ||||||||||||
Sbjct 698 TCGGATGTTTCAGTTGTTGGCGAAGCATCGGCTTGGGACGAGTCACAGCTTGTGGCGAGA 757
Query 651 TTGACATCGACTTTCATGCGTTTGTCAGAAAGACTTTCTGGCTTTCTCAGTGAAGGTCAG 710
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TTGACATCAACTTTCATGAGTTTGTCAGAAAGACTTTCTGGCTTTCTCAGTGAAGGTCAG 817
Query 711 TCAGTGTTCATGTCTGCTAAGTTATTTGACAAAATTGCAATGCTTGTAGATGATACACAG 770
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 818 TCTGTGTTCATGTCTGCTAAGTTGTTTGACAAAATTGCAATGCTTGTAGATGATACACAG 877
Query 771 CTGTACGAGCGCTTTAATGAGATAAGATCCAAGCTTTTGAGTTTGATTGAGTCAAGGCAA 830
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||
Sbjct 878 CTGTACGAGCGCTTTAATGATATAAGATCGAAGCTTTTGAGTTTGATAGAGTCAAAGCAA 937
Query 831 AACTCAGGACTTGTTAACCAAATCAGAGATTTGGCCCAGCGCCTTGTGAATCTTTTCGAT 890
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 938 AACTCAGGACTTGTTAACCAAGTCAGAGATTTGGCTCAGCGCCTTGTGAATCTTTTCGAC 997
Query 891 GATGGTCAAAGGTCTGTCTCGCCTCCGCTGATTGATTTACAAGAGCGCCTCACTGCGACC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 GATGGTCAAAGGTCTGTCTCGCCTCCGCTGATTGATTTACAAGAGCGCCTCACTGCGACC 1057
Query 951 ATAGAAGATTTTCAGAAGCAACTCGATTTGATAGTTAAATATGACTGGGATTTTGATCAC 1010
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1058 ATAGAAGATTTTCAGAAGCAACTGGATTTGATAGTTAAATATGACTGGGATTTTGATCAC 1117
Query 1011 TACCTGGAGGAGGATGTCCCTGCTGCGATTGAGTATGTTAGAGCGCAAAGCAAGCCCAAG 1070
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1118 TACCTGGAAGAGGATGTCCCTGCTGCGATTGAGTATGTAAGAGCACAAAGCAAGCCCAAG 1177
Query 1071 GATGGCAAACTATTCGCAATTGGGCACTCCATGGGGGGTATCCTACTCTATGCAATGCTG 1130
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 GACGGCAAACTATTCGCAATTGGGCACTCCATGGGGGGTATCCTACTCTATGCAATGCTA 1237
Query 1131 TCACGTTGTGCTTTTGAAGGACGAGAACCTTCTGTGGCAGCTGTGGCAACTCTGGCATCA 1190
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1238 TCACGTTGTGCTTTTGAAGGACGAGAACCTTCCGTGGCAGCTGTGGCAACTCTGGCATCA 1297
Query 1191 TCGGTTGATTACACAACCTCAGATTCTGCACTCAAATTGCTCATACCTCTTGCCAATCCT 1250
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TCGGTTGATTACACAACCTCAAATTCTGCACTCAAATTGCTCATACCTCTTGCCAATCCT 1357
Query 1251 GCAGAAGCTCTGAGTGTTCCAGTTGTTCCGCTGGGCGCTCTGTTGGCTGCCGCTTTTCCT 1310
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1358 GCAGAAGCTCTGAGTGTTCCAGTTGTTCCTCTGGGTGCTTTGTTGGCTGCCGCTTTTCCT 1417
Query 1311 CTTTCGACACGTCCTCCATATGTATTATCTTGGCTTAATGATTTGATATCATCAACAGAT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CTTTCGACACGTCCTCCATATGTATTATCTTGGCTTAATGATTTGATATCATCAACAGAT 1477
Query 1371 ATGATGCACCCTGAAATGTTAGAAAAGCTTGTCTTGAATAACTTCTGTACCATACCTGCA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 ATGATGCACCCTGAAATGTTAGAAAAGCTTGTCTTGAATAACTTCTGTACCATACCTGCA 1537
Query 1431 AAACTACTTATTCAGCTGACAACGGCCTTTCGAGAGGGAGGCCTACGTGATCGTAGTGGT 1490
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1538 AAACTACTTATTCAGCTGACAACGGCCTTTCGAGAGGGAGGCTTACGTGATCGTAGTGGT 1597
Query 1491 AAATTTTACTATAAGGATCATCTTCCCAGAACCAGTGTCCCTGTCTTAGCTCTTGCAGGT 1550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 AAATTTTACTATAAGGATCATCTTCCCAGAACCAGTGTCCCTGTCTTAGCTCTTGCAGGT 1657
Query 1551 GATCGGGACTTAATCTGTCCCCCTGCGGCTGTGGAAGACACTGTTAAGCTGTTTCCCGAG 1610
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1658 GATCGGGACTTGATCTGCCCCCCTGCGGCTGTGGAAGACACTGTTAAGCTGTTTCCGGAG 1717
Query 1611 AACTTGGTCACTTATAAGTTACTTGGAGAACCAGACGGACCACATTATGCACACTATGAT 1670
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1718 AACTTGGTCACTTATAAGTTACTTGGAGAACCAGATGGACCACATTATGCACACTATGAT 1777
Query 1671 TTGGTTGGAGGACGACTGGCGGTGGAGCAAGTCTATCCTTGCATAACTGAATTTCTTAGC 1730
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1778 TTGGTTGGAGGACGACTGGCAGTGGAGCAAGTCTATCCTTGCATAACTGAATTTCTTAGC 1837
Query 1731 CACCATGATTCCGCATAAGTGAAACATTTTGGG 1763
||||||||||||||||||||||||||||| |||
Sbjct 1838 CACCATGATTCCGCATAAGTGAAACATTTCGGG 1870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87449349390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5