BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920418
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15140.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase | c... 1489 0.0
AT1G15165.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 76.8 3e-13
> AT1G15140.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase |
chr1:5210206-5212349 REVERSE LENGTH=1297
Length=1297
Score = 1489 bits (806), Expect = 0.0
Identities = 890/931 (96%), Gaps = 4/931 (0%)
Strand=Plus/Plus
Query 1 GAGCTCC-AAAACTCTCAACCATGTCCACTCTTCCTTTCGCGCCTTCTGTCACCCATGCG 59
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GAGCCCCAAAAACTCTCCACCATGTCCACTCTTCCTTTCGCGCCTTCTGTCACCCATGCG 251
Query 60 CACTTTAGCCACTCCCTCTCCCCCATGTTTATCCTGCGCCGA-CTCCCTCTCACCCGCCA 118
|||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||
Sbjct 252 CACTTTAGCCACTCCCTCTCCCCCATGTTTATCCTGCGCC-ATCTCCCTCTTACACGCCA 310
Query 119 TCTCCGCTTATCCCGGAATAACCGCGTCGCTTCCGTCGTATCCGCCGCCGCCGTTCGCCA 178
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 311 TCTCCGTTTATCCCGAAATAACCGCGTCGCTTCCGTTGTATCCGCCGCCGCCGTTCGCCA 370
Query 179 GGACGCCTCCCTCTGGACCCCAGCTCCTCTCTCTCTAATCGAATCGGCCGCAGAATCGCT 238
|||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 371 GGACGCTTCCCTCTGGACTCCAGCTCCTCTCTCTCTAATCGAATCAGCTGCAGAATCGCT 430
Query 239 TTTCCACATCTCAATCGACATTTCAAACGCTCCGGATCTCGTAGCCTCTTACACGAGACC 298
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 431 TTTCCACATCTCAATCGACATTTCAAACGCTCCGGATCTCGTAGCTTCGTACACGAGACC 490
Query 299 CGGTCAGTATCTCCAGCTCCGTGTTCCTGATGTTGAGAAGCCTTCTTTTATGGCAATCGC 358
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CGGTCAGTATCTCCAGATCCGTGTTCCTGATGTTGAGAAGCCTTCTTTTATGGCAATCGC 550
Query 359 TTCTCCTCCTTCATTGGCGGCTTCTCGTGGTGCTTTCGAATTCTTGGTCAAGAGCATCGC 418
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TTCTCCTCCTTCCTTGGCGTCTTCTCGTGGTGCTTTCGAATTCTTGGTCAAGAGCATCGC 610
Query 419 TGGATCTACCGCGGAGATTCTCTGTGGGTTAAAGAAAGGGGAGACCGTTGAGCTTAGCCC 478
||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |
Sbjct 611 TGGTTCTACCGCGGAGATTCTCTGCGGGTTGAAGAAAGGAGAGACCGTTGAGCTTAGCTC 670
Query 479 TGTGATGGGTAATGGTTTCAATATCGATCTGATTGATCCTCCTGAGGAATATCCCACGGT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 671 TGTGATGGGTAATGGTTTCAATATCGATCTGATTGATCCTCCTGAGGAATATCCCACCGT 730
Query 539 TTTGATTTTCGCCACTGGATCTGGAATTAGCCCCATCCGCTCACTGATCGAGTCAGGATT 598
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 731 TTTGATTTTCGCCACTGGATCTGGAATTAGCCCCATCCGCTCACTAATCGAATCAGGATT 790
Query 599 TGGCGCTGATAGAAGATCTGACGTAAGACTCTATTATGGAGCTAGGAACCTGAAAAGGAT 658
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 791 TGGCGCTGATAGAAGATCTGACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGAT 850
Query 659 GGCTTACCAGGATAAGTTTAAAGAGTGGGAATCATCGGGTGTCAAAGTTGTGCCGGTATT 718
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 851 GGCTTACCAGGAAAAGTTTAAAGAGTGGGAATCAGCGGGTGTCAAAGTTGTGCCGGTATT 910
Query 719 ATCACAGCCAGATGATGGTTGGAAAGGGGAAACCGGATATGTGCAGGCTGCTTTTGCAAG 778
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 911 ATCACAGCCAGATGATGGGTGGAAAGGGGAAACTGGATATGTGCAGGCTGCTTTTGCAAG 970
Query 779 GGCTAAACAACTTTCAGCTCCTGAGGCCACAGGAGCGGTGCTGTGCGGACAGAAACAAAT 838
||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 971 GGCTAAACAGCTATCAGCTCCCAAGGCCACGGGAGCGGTGCTGTGCGGACAGAAACAAAT 1030
Query 839 GGCTGAGGAGATAACTTCAATTCTTGTAGCTGATGGAGTCTCAAATGACAAGCTGCTCAA 898
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GGCTGAGGAGATAACTTCAATGCTTGTAGCTGATGGAGTCTCAAATGACAAGCTGCTCAA 1090
Query 899 AAACTTTTGACAGATATA-TTCTTGTATTAT 928
|||||||||||||||||| ||||||||||||
Sbjct 1091 AAACTTTTGACAGATATAGTTCTTGTATTAT 1121
> AT1G15165.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:5217719-5220113 REVERSE LENGTH=1036
Length=1036
Score = 76.8 bits (41), Expect = 3e-13
Identities = 41/41 (100%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 52 CCCATGCGCACTTTAGCCACTCCCTCTCCCCCATGTTTATC 92
|||||||||||||||||||||||||||||||||||||||||
Sbjct 44 CCCATGCGCACTTTAGCCACTCCCTCTCCCCCATGTTTATC 84
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45361434741
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5