BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920427
Length=509
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 654 0.0
> AT1G15230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; Has
26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5242198-5243227
REVERSE LENGTH=1030
Length=1030
Score = 654 bits (354), Expect = 0.0
Identities = 450/497 (91%), Gaps = 4/497 (1%)
Strand=Plus/Plus
Query 12 CTCTGCATCTATGGAGGCTACGAAAGAACA-AGTCGGTTTGCTCGACAAGATCCTCCCGC 70
|||||||||||||||||||||||||||| | ||| || |||||||| | |||||||||||
Sbjct 22 CTCTGCATCTATGGAGGCTACGAAAGAA-AGAGTTGGCTTGCTCGATACGATCCTCCCGC 80
Query 71 CGGCCCTTGCAGACGCCGGGCTCGAAGATTGTGCTCTGCCGCCGGAATCTATTCAGGAAG 130
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 81 CGGCACTTGCAGACGCCGGTCTCGAGGATTGTGCTCTGCCGCCGGAATCTATTCAGGAAG 140
Query 131 CATTTCGCAAAGCCGCCAACGCCGTGAAGTCTCGCGCAGCCTCGATTTTCGAACACGAGG 190
|||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 141 CATTTCGCAAAGCCGCTAACGCCGTGAAGTCTCGCGCAGCGTCGATATTCGACCACGAGG 200
Query 191 AGGAAGGCGGTTGTGTAGCGGATCCGATTCCGGAAGCTTCTGACACGATCATTATCGGCG 250
|||||| ||||||| |||||||||| ||||||||| || | |||| ||| || | || |
Sbjct 201 AGGAAGACGGTTGTTTAGCGGATCCTATTCCGGAAACTGCAGACAAGATTATCGTTGGAG 260
Query 251 GGGATAATGAAAGGGATACTGGGCCGTGTTTAGCCGGAAAGGGCAATGTGAAGTTGGCTG 310
| || ||||||||||||||||||||||||||||| ||||| |||| || |||||||||||
Sbjct 261 GAGACAATGAAAGGGATACTGGGCCGTGTTTAGCTGGAAAAGGCATTGAGAAGTTGGCTG 320
Query 311 AATCGGAAA-AGGCCGGAGATTTGGTTGTAGCAGGCGAAGGAGGAGAAGGGAGGAGCTGT 369
||||| ||| |||||||||||||||| || || |||||||||| |||||||| ||||||
Sbjct 321 AATCG-AAACAGGCCGGAGATTTGGTGGTGGCTGGCGAAGGAGAAGAAGGGAAGAGCTGC 379
Query 370 GTTGATGGTTTGAAGGATTTAGATGTCGAAGGTATTGAGAGCAGCGGTGAGAAGAAGGAT 429
|||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 380 GTTGATGGTTTGAAGGATCTAGATGTTGAAGGTATTGAGAGAAGCAGTGAGAAGAAGGAT 439
Query 430 CAGAGTGAAGAAGACGAAGACGAGGAGATGAAACCGATCTTGGTTGAAGGATTTGTCTGA 489
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 440 CAGAGTGATGAAGATGAAGAAGAGGAGATGAAACCGATCTTGGTTGAAGGATTTGTCTGA 499
Query 490 GATTCCTCACATTGTCA 506
|| ||||||||||||||
Sbjct 500 GAGTCCTCACATTGTCA 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24313327148
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5