BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920429

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15250.1 | Symbols:  | Zinc-binding ribosomal protein family...   503    4e-142


> AT1G15250.1 | Symbols:  | Zinc-binding ribosomal protein family 
protein | chr1:5248664-5249474 REVERSE LENGTH=542
Length=542

 Score =  503 bits (272),  Expect = 4e-142
 Identities = 314/333 (94%), Gaps = 7/333 (2%)
 Strand=Plus/Plus

Query  1    TCAT-CCCTGCATCTGCGGCAATGGGTAAGGGAACAGGGAGCTTTGGTAAGAGGAGGAAC  59
            |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  73   TCATCCCCTGCATCTGCGGCAATGGGTAAAGGAACAGGGAGCTTTGGTAAGAGGAGGAAC  132

Query  60   AAGTCACACACGCTCTGTGTGAGATGTGGTCGCCGAAGCTTTCACATCCAGAAGAGTCGT  119
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  133  AAGTCACACACGCTCTGTGTGAGATGTGGTCGCCGGAGCTTTCACATCCAGAAGAGTCGT  192

Query  120  TGCTCGGCATGTGCTTATCCAGCTGCCAGAAAGAGGACATATAACTGGAGCGTGAAAGCA  179
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  193  TGCTCGGCATGTGCTTATCCAGCTGCCAGAAAGAGGACATATAACTGGAGTGTGAAGGCA  252

Query  180  ATAAGAAGAAAGACAACAGGAACTGGTAGGATGAGGTATCTCCGCAATGTGCCTCGTAGG  239
            |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct  253  ATAAGAAGAAAGACAACAGGAACTGGTAGGATGAGGTATCTCCGTAATGTCCCTCGAAGG  312

Query  240  TTCAAGACTGGCTTTAGAGAAGGTACCCAAGCCACCCCTAGAAGAAACAA-GTCTGCAGC  298
            ||||||||| |||||||||||||||| ||||||||||| | | ||||||| | |||||||
Sbjct  313  TTCAAGACTTGCTTTAGAGAAGGTACGCAAGCCACCCC-A-A-GAAACAAAG-CTGCAGC  368

Query  299  TGCTTCTTCCTAGGCATTTGTTCATTTTGCGTT  331
            | | |||||||||||||| ||||| ||||||||
Sbjct  369  TTCGTCTTCCTAGGCATT-GTTCAGTTTGCGTT  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5