BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920436
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15320.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1437 0.0
> AT1G15320.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: flower;
EXPRESSED DURING: petal differentiation and expansion stage;
Has 62 Blast hits to 62 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5272256-5274013
REVERSE LENGTH=1450
Length=1450
Score = 1437 bits (778), Expect = 0.0
Identities = 928/1000 (93%), Gaps = 11/1000 (1%)
Strand=Plus/Plus
Query 3 tttttGATGAATTTCAAAATGGATATTGATGCATTTGAGGACATT---T-T-CAATGAGA 57
|||||||||| ||||| |||||||| ||||||||| |||| || | | ||||||||
Sbjct 262 TTTTTGATGATTTTCATAATGGATAGGGATGCATTTTAGGA-TTTGAGTGTGCAATGAGA 320
Query 58 TTACAAGAGTTGGTGCTTGTGAAAATCAGCTTA-TTTGCTTATGGTTAATTGGGTTTGTC 116
|||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 321 TTACAAGAGTTGGTTCTTGTGAAAATCAGCTTAGTTTTCTTATGGTTAATTGGGTTTGTC 380
Query 117 TTCCTGCAACATAGTGAAGAGAATGGATTTGAAGAACCCAACAACGGGGAAGAACTTTCA 176
|||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 381 TTCCTGCAACGTAGTGAAGAGAATGGATTTGAAGAACCAAACAATGGGGAAGAACTTTCC 440
Query 177 TGGGATGATCTGGAGAGAGAAGCTGCTAGTAATATATCGTCTAAAAGATCTCAGGCTGGG 236
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct 441 TGGGATGATCTGGAGAGAGAAGCTGCTAGTAATATATCATCTAAAAGATCTCATGCTGAG 500
Query 237 AGATCTCACCAGCAAGAGTCTTTTAGAAAAGGTGATGAACTTTCTGGAGACTTGTATGAA 296
||||||||||| || || ||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 501 AGATCTCACCAACACGAATCTTTTACAAAAGGTGACGAACTTTCTGGAGACTTGTACGAA 560
Query 297 CTGTGGAGGCAAGAACAGAACAGCATTGCCGCAAGACTAGACAAAGAGCTTAAATCCAGG 356
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 561 CTGTGGAGGCAAGAACAGAACAGCATTGCGGCAAGGCTAGACAAAGAGCTAAAATCCAGG 620
Query 357 TGGGAACTGGATGAACTGATTGAGGAACAGCTGAGCAGATACCAGTCCCATTACTACAAG 416
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 621 TGGGAACTCGATGAACTGATTGAAGAACAGCTGAGCAGATACCAGTCCCATTACGACAAT 680
Query 417 TCCATGGTTTCAACGTCCTTAAAAGATGTCTCTAACCTCATCCTT-CCTACGTGGTTACC 475
|||||||||||||| | |||||| ||||||||||||||| | ||| || |||||| ||||
Sbjct 681 TCCATGGTTTCAACTTTCTTAAAGGATGTCTCTAACCTCGT-CTTACCCACGTGGATACC 739
Query 476 GCCTCATGAGCTGGCTGCCGTGGCCTGGCTTGGAGACTGGCGTCCCACCTCCATTCTTGA 535
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 740 ACCTCATGAGCTAGCTGCTGTGGCCTGGCTTGGAGACTGGCGTCCCACCTCCATTCTTGA 799
Query 536 CCTTGTCCGCATTCTGGCGGCTCAAAACCCCTCCTTCTCTCTGTCTGAGTCGAGTGAACG 595
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 800 CCTTGTCCGCATTCTGGCAGCTCAAAACCCCTCCTTCTCTCTGTCTGAGTCGAGTTTACG 859
Query 596 TGTGCTCTCTCAGCTTCTCCGTGAGATACGCATTGAGGAGGCTGTGATCGATGAGGAGTA 655
||||||||||||||| | |||||||||||||| || ||||| || || |||||||| ||
Sbjct 860 CGTGCTCTCTCAGCTTTTACGTGAGATACGCATCGAAGAGGCCGTTATTGATGAGGAATA 919
Query 656 TGCAGAAATTCAGGCCACCTGTGTCCTGCACCTTCCTTTTTCCCCGCTCTGCAATACTCG 715
||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||
Sbjct 920 TGCAGAAATTCAGGCCACCGGTGTCTTGTACCTCCCTTTTTCCCCGCTCTGCAATACTCG 979
Query 716 GTCGCATGAAGAAGCTCTGCGTTCTGTGCAGGAGCTCTTTGGGAACATCCATAGAGTCAT 775
|| ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 980 GTTGCATGAAGAAGCTCTGCGTTCTGTGCAGGAGCTGTTTGGGAACATACATAAAGTCAT 1039
Query 776 CTCAAAGGCACAACGACTCAGGTATAAAGTGTTGGAGCTGGTGATGAAGAAGCTGCTGAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 CTCAAAGGCACAACGACTCAGGTATAAAGTGTTGGAGCTGGTGATGAAGAAGCTGCTGAA 1099
Query 836 TCAAACGGATACAGCCGAGTTTGTGGTCGCATTTGCAGGGATTCAAGACGCCATCCACCA 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1100 TCAAACGGATACAGCCGAGTTTGTGGTCGCATTTGCAGGGATTCAAGACGCCATACACCA 1159
Query 896 GTTTGGAGAGCAGAAGAAGCTAAGAAAGTATT-ACCCAGCAGTTCCTTCACCTCTGAAGG 954
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1160 GTTTGGAGAGCAGAAGAAGCTAAGAAAG-ATTTACCCAGCAGTTCCTTCACCTCTGAAGG 1218
Query 955 GATCAGGATCATCTAGTTGAGAGCTATGTTGGAGCAAAGC 994
||||||||||||||||||||||||| ||| | ||||||||
Sbjct 1219 GATCAGGATCATCTAGTTGAGAGCTTTGTAGAAGCAAAGC 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5