BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920442
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15380.1 | Symbols: | Lactoylglutathione lyase / glyoxalase... 891 0.0
> AT1G15380.1 | Symbols: | Lactoylglutathione lyase / glyoxalase
I family protein | chr1:5290745-5292535 FORWARD LENGTH=983
Length=983
Score = 891 bits (482), Expect = 0.0
Identities = 524/545 (96%), Gaps = 0/545 (0%)
Strand=Plus/Plus
Query 1 AGGATCTTTGTCTCTGGAAAATGAAGGAAAACGCAGGTAACCCTTTGCATCTCACGTCAC 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 191 AGGATCTTTGTCTCTGGAAAATGAAGGAAGACGCAGGAAACCCTTTGCATCTCACGTCAC 250
Query 61 TGAACCATGTCTCTGTCTTGTGCCGTTCCGTCGACGAATCTATGAACTTTTACCAAAAGG 120
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 251 TGAACCATGTCTCTGTCTTGTGCCGATCCGTCGACGAATCTATGAATTTTTACCAAAAGG 310
Query 121 TGTTAGGGTTCATCCCGATTCGAAGACCTGAATCCTTGAATTTTGAAGGCGCTTGGTTGT 180
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 311 TGTTAGGGTTCATCCCGATACGAAGACCTGAATCCTTAAATTTTGAAGGCGCTTGGTTGT 370
Query 181 TTGGTCATGGGATTGGAATACACCTACTCTGTGCCCCAGAACCAGAGAAACTTCCCAAGA 240
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 371 TTGGTCACGGGATTGGAATACACCTCCTGTGTGCCCCAGAACCAGAGAAACTTCCCAAGA 430
Query 241 AAACTGCGATCAATCCCAAGGATAATCACATCTCTTTCCAGTGTGAGAGTATGGGAGTAG 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AAACTGCGATTAATCCCAAGGATAATCACATCTCTTTCCAGTGTGAGAGTATGGGAGTAG 490
Query 301 TGGAGAAGCAGCTGGAGGAAATGGGGATAGAGTATGTAAGGGCATTAGTAGAAGAAGGAG 360
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 491 TGGAGAAGAAGCTGGAGGAAATGGGGATAGATTATGTAAGGGCATTAGTAGAAGAAGGAG 550
Query 361 GGATCCAAGTGGACCAGCTCTTCTTCCACGACCCTGATGGCTTCATGATCGAGATCTGCA 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 551 GGATCCAAGTGGACCAGCTCTTCTTCCATGACCCTGATGGCTTCATGATCGAGATTTGCA 610
Query 421 ACTGTGACAGCCTCCCCGTTGTCCCCCTCGTAGGAGGAATGGCTCGGTCTTGCTCAAGAG 480
|||| || ||||||||||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct 611 ACTGCGATAGCCTCCCCGTAGTCCCCCTCGTAGGAGAAATGGCTCGGTCCTGCTCAAGAG 670
Query 481 TCAAACTCCACCAAATGGTGCAGCCACAACCGCAGACTCAGATCCACCAAGTGGTCTACC 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TCAAACTCCACCAGATGGTGCAGCCACAACCGCAGACTCAGATCCACCAAGTGGTCTACC 730
Query 541 CCTAA 545
| |||
Sbjct 731 CTTAA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5