BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920443

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15385.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   311    2e-84


> AT1G15385.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); 
Has 6 Blast hits to 6 proteins in 3 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5292756-5293265 
REVERSE LENGTH=510
Length=510

 Score =  311 bits (168),  Expect = 2e-84
 Identities = 218/241 (90%), Gaps = 7/241 (3%)
 Strand=Plus/Plus

Query  40   aacaacaacaaaaacaCG-A-A-GATGATGAGTTCCGCAAAAGAGAGTCGTAATGGTACC  96
            ||||||||||| |||| | | | ||||||||||||||||||||| ||| |||||||||||
Sbjct  72   AACAACAACAAGAACATGAAGATGATGATGAGTTCCGCAAAAGAAAGTGGTAATGGTACC  131

Query  97   ACTAACAATT-TTATCACAGAAACGAGGAATAAGAAGGTGGAGAGGAAGGCATCTATGGA  155
            |||||  ||| |||| | ||| |||| ||||||||||||||| ||||||||||| |||||
Sbjct  132  ACTAA-TATTGTTATTAAAGAGACGATGAATAAGAAGGTGGAAAGGAAGGCATCGATGGA  190

Query  156  CGTGGACAA-ATGCGCAGAAGCTTTCATCACAAAGTTCAGAAATCAGCTTCTTCTCCAGC  214
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  191  CGTGGACAAGA-GCGCAGAAGCTTTCATCACAAAGTTCAGAAATCAGCTTCTTCTCCAGC  249

Query  215  GTCTCGAATCCATCGAAAACATGCTCTCCCGAGGCCCTTAACACTACTTATCAATACACA  274
            |||| |||||||| |||||||||||||||  ||||||||||||||||||||||||| |||
Sbjct  250  GTCTTGAATCCATTGAAAACATGCTCTCCAAAGGCCCTTAACACTACTTATCAATATACA  309

Query  275  C  275
            |
Sbjct  310  C  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12617204999


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5